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E-grāmata: Algorithms in Bioinformatics: 14th International Workshop, WABI 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings

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  • Formāts: PDF+DRM
  • Sērija : Lecture Notes in Computer Science 8701
  • Izdošanas datums: 15-Aug-2014
  • Izdevniecība: Springer-Verlag Berlin and Heidelberg GmbH & Co. K
  • Valoda: eng
  • ISBN-13: 9783662447536
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Algorithms in Bioinformatics: 14th International Workshop, WABI 2014, Wroclaw, Poland, September 8-10, 2014. ProceedingsPalielināt
  • Formāts: PDF+DRM
  • Sērija : Lecture Notes in Computer Science 8701
  • Izdošanas datums: 15-Aug-2014
  • Izdevniecība: Springer-Verlag Berlin and Heidelberg GmbH & Co. K
  • Valoda: eng
  • ISBN-13: 9783662447536
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This book constitutes the refereed proceedings of the 13th International Workshop on Algorithms in Bioinformatics, WABI 2014, held in Wroclaw, Poland, in September 2014. WABI 2014 was one of seven conferences that were organized as part of ALGO 2014. WABI is an annual conference series on all aspects of algorithms and data structure in molecular biology, genomics and phylogeny data analysis. The 26 full papers presented together with a short abstract were carefully reviewed and selected from 61 submissions. The selected papers cover a wide range of topics from sequence and genome analysis through phylogeny reconstruction and networks to mass spectrometry data analysis.
QCluster: Extending Alignment-Free Measures with Quality Values for Reads Clustering
1(13)
Matteo Comin
Andrea Leoni
Michele Schimd
Improved Approximation for the Maximum Duo-Preservation String Mapping Problem
14(12)
Nicolas Boria
Adam Kurpisz
Sabula Leppanen
Monaldo Mastrolilli
A Faster 1.375-Approximation Algorithm for Sorting by Transpositions
26(12)
Luis Felipe I. Cunha
Luis Antonio B. Kowada
Rodrigo de A. Hansen
Celina M.H. de Figueiredo
A Generalized Cost Model for DCJ-Indel Sorting
38(14)
Phillip E.C. Compeau
Efficient Local Alignment Discovery amongst Noisy Long Reads
52(16)
Gene Myers
Efficient Indexed Alignment of Contigs to Optical Maps
68(14)
Martin D. Muggli
Simon J. Puglisi
Christina Boucher
Navigating in a Sea of Repeats in RNA-seq without Drowning
82(15)
Gustavo Sacomoto
Blerina Sinaimeri
Camille Marchet
Vincent Miele
Marie-France Sagot
Vincent Lacroix
Linearization of Median Genomes under DCJ
97(10)
Shuai Jiang
Max A. Alekseyev
An LP-Rounding Algorithm for Degenerate Primer Design
107(15)
Yu-Ting Huang
Marek Chrobak
GAML: Genome Assembly by Maximum Likelihood
122(13)
Vladimir Boza
Brona Brejova
Tomas Vinar
A Common Framework for Linear and Cyclic Multiple Sequence Alignment Problems
135(13)
Sebastian Will
Peter F. Stadler
Entropic Profiles, Maximal Motifs and the Discovery of Significant Repetitions in Genomic Sequences
148(13)
Laxmi Pariah
Cinzia Pizzi
Simona E. Rombo
Estimating Evolutionary Distances from Spaced-Word Matches
161(13)
Burkhard Morgenstern
Binyao Zhu
Sebastian Horwege
Chris-Andre Leimeister
On the Family-Free DC J Distance
174(13)
Fabio Viduani Martinez
Pedro Feijao
Marilia D. V. Braga
Jens Stoye
New Algorithms for Computing Phylogenetic Biodiversity
187(17)
Constantinos Tsirogiannis
Brody Sandel
Adrija Kalvisa
The Divisible Load Balance Problem and Its Application to Phylogenetic Inference
204(13)
Kassian Robert
Tomas Flouri
Andre Aberer
Alexandros Stamatakis
Multiple Mass Spectrometry Fragmentation Trees Revisited: Boosting Performance and Quality
217(15)
Kerstin Scheubert
Franziska Hufsky
Sebastian Bocker
An Online Peak Extraction Algorithm for Ion Mobility Spectrometry Data
232(15)
Dominik Kopczynski
Sven Rahmann
Best-Fit in Linear Time for Non-generative Population Simulation (Extended Abstract)
247(16)
Niina Haiminen
Claude Lebreton
Laxmi Parida
GDNorm: An Improved Poisson Regression Model for Reducing Biases in Hi-C Data
263(18)
Ei-Wen Yang
Tao Jiang
Pacemaker Partition Identification
281(15)
Sagi Snir
Manifold de Bruijn Graphs
296(15)
Yu Lin
Pavel A. Pevzner
Constructing String Graphs in External Memory
311(15)
Paola Bonizzoni
Gianluca Delia Vedova
Yuri Pirola
Marco Previtali
Raffaella Rizzi
Topology-Driven Trajectory Synthesis with an Example on Retinal Cell Motions
326(14)
Chen Gu
Leonidas Guibas
Michael Kerber
A Graph Modification Approach for Finding Core-Periphery Structures in Protein Interaction Networks
340(12)
Sharon Bruckner
Falk Huffner
Christian Komusiewicz
Interpretable Per Case Weighted Ensemble Method for Cancer Associations
352(2)
Adrin Jalali
Nico Pfeifer
Reconstructing Mutational History in Multiply Sampled Tumors Using Perfect Phylogeny Mixtures
354(15)
Iman Hajirasouliha
Benjamin J. Raphael
Author Index 369
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