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Shotgun Protein Sequencing (Keynote) |
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1 | (1) |
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Locality Kernels for Protein Classification |
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2 | (10) |
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When Less Is More: Improving Classification of Protein Families with a Minimal Set of Global Features |
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12 | (13) |
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Fault Tolerance for Large Scale Protein 3D Reconstruction from Contact Maps |
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25 | (13) |
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Bringing Folding Pathways into Strand Pairing Prediction |
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38 | (11) |
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A Fast and Accurate Heuristic for the Single Individual SNP Haplotyping Problem with Many Gaps, High Reading Error Rate and Low Coverage |
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49 | (12) |
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Two Birds, One Stone: Selecting Functionally Informative Tag SNPs for Disease Association Studies |
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61 | (12) |
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Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity |
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73 | (12) |
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Haplotype Inference Via Hierarchical Genotype Parsing |
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85 | (13) |
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Seeded Tree Alignment and Planar Tanglegram Layout |
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98 | (13) |
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Inferring Models of Rearrangements, Recombinations, and Horizontal Transfers by the Minimum Evolution Criterion (Extended Abstract) |
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111 | (13) |
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An Ω(n2 / log n) Speed-Up of TBR Heuristics for the Gene-Duplication Problem |
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124 | (12) |
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Incremental Discovery of Irredundant Motif Bases in Time O (|Σ|n2 log n) (Extended Abstract) |
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136 | (13) |
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A Graph Clustering Approach to Weak Motif Recognition |
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149 | (12) |
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Informative Motifs in Protein Family Alignments |
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161 | (10) |
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Topology Independent Protein Structural Alignment |
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171 | (12) |
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Generalized Pattern Search and Mesh Adaptive Direct Search Algorithms for Protein Structure Prediction |
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183 | (11) |
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Alignment-Free Local Structural Search by Writhe Decomposition |
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194 | (2) |
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Defining and Computing Optimum RMSD for Gapped Multiple Structure Alignment |
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196 | (12) |
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Using Protein Domains to Improve the Accuracy of Ab Initio Gene Finding |
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208 | (8) |
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Genomic Signatures in De Bruijn Chains |
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216 | (12) |
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Fast Kernel Methods for SVM Sequence Classifiers |
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228 | (12) |
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On-Line Viterbi Algorithm for Analysis of Long Biological Sequences |
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240 | (12) |
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Predicting Protein Folding Kinetics Via Temporal Logic Model Checking (Extended Abstract) |
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252 | (13) |
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Christopher James Langmead |
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Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops |
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265 | (12) |
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Algorithms for the Extraction of Synteny Blocks from Comparative Maps |
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277 | (12) |
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Computability of Models for Sequence Assembly |
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289 | (13) |
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Fast Algorithms for Selecting Specific siRNA in Complete mRNA Data |
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302 | (8) |
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RNA Folding Including Pseudoknots: A New Parameterized Algorithm and Improved Upper Bound |
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310 | (13) |
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HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding |
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323 | (12) |
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Homology Search with Fragmented Nucleic Acid Sequence Patterns |
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335 | (11) |
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Fast Computation of Good Multiple Spaced Seeds |
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346 | (13) |
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Inverse Sequence Alignment from Partial Examples |
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359 | (12) |
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Novel Approaches in Psychiatric Genomics (Keynote) |
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371 | (1) |
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The Point Placement Problem on a Line -- Improved Bounds for Pairwise Distance Queries |
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372 | (11) |
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Efficient Computational Design of Tiling Arrays Using a Shortest Path Approach |
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383 | (12) |
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Efficient and Accurate Construction of Genetic Linkage Maps from Noisy and Missing Genotyping Data |
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395 | (12) |
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A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence |
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407 | (13) |
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Composing Globally Consistent Pathway Parameter Estimates Through Belief Propagation |
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420 | (11) |
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| Author Index |
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431 | |
