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Biocomputing 2011 - Proceedings Of The Pacific Symposium [Hardback]

Edited by (Stanford Univ, Usa), Edited by (Stanford Univ, Usa), Edited by (Indiana Univ, Usa), Edited by (Stanford Univ, Usa), Edited by (Univ Of Colorado Health Sciences Center, Usa)
  • Formāts: Hardback, 500 pages
  • Izdošanas datums: 17-Dec-2010
  • Izdevniecība: World Scientific Publishing Co Pte Ltd
  • ISBN-10: 9814335045
  • ISBN-13: 9789814335041
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  • Cena: 205,57 €
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  • Formāts: Hardback, 500 pages
  • Izdošanas datums: 17-Dec-2010
  • Izdevniecība: World Scientific Publishing Co Pte Ltd
  • ISBN-10: 9814335045
  • ISBN-13: 9789814335041
Citas grāmatas par šo tēmu:
The Pacific Symposium on Biocomputing (PSB) 2011 is an international, multidisciplinary conference for the presentation and discussion of current research in the theory and application of computational methods in problems of biological significance. Presentations are rigorously peer reviewed and are published in an archival proceedings volume. PSB 2011 will be held on January 3 – 7, 2011 in Kohala Coast, Hawaii. Tutorials and workshops will be offered prior to the start of the conference.PSB 2011 will bring together top researchers from the US, Asia Pacific, and around the world to exchange research results and address pertinent issues in all aspects of computational biology. It is a forum for the presentation of work in databases, algorithms, interfaces, visualization, modeling, and other computational methods, as applied to biological problems, with emphasis on applications in data-rich areas of molecular biology.The PSB has been designed to be responsive to the need for critical mass in sub-disciplines within biocomputing. For that reason, it is the only meeting whose sessions are defined dynamically each year in response to specific proposals. PSB sessions are organized by leaders of research in biocomputing's “hot topics”. In this way, the meeting provides an early forum for serious examination of emerging methods and approaches in this rapidly evolving field.
Preface v
Computational Methods Integrating Diverse Biological And Clinical Data For Translational Science
Session Introduction
1(3)
Gurkan Bebek
Mehmet Koyutuk
Mark Chance
Nathan D. Price
Towards Integrative Gene Prioritization in Alzheimer's Disease
4(10)
Jang Lee
Graciela Gonzalez
Systems Biology Analyses of Gene Expression and Genome Wide Association Study Data in Obstructive Sleep Apnea
14(12)
Yu Liu
Sanjay R. Patel
Rod K. Nibbe
Sean Maxwell
Salim A. Chowdhury
Mehmet Koyuturk
Xiaofeng Zhu
Emma Larkin
Sarah Buxbaum
Naresh Punjabi
Sina Gharib
Susan Redline
Mark R. Chance
Finding Most Likely Haplotypes in General Pedigrees through Parallel Search with Dynamic Load Balancing
26(12)
Lars Often
Rina Dechter
Dynamic, Multi-Level Network Models of Clinical Trials
38(12)
Marco D. Sorani
Geoffrey T. Manley
J. Claude Hemphill
Sergio E. Baranzini
Mining Functionally Relevant Gene Sets for Analyzing Physiologically Novel Clinical Expression Data
50(12)
Sevin Turcan
Xintao Wei
Jill Maron
Douglas E. Vetter
Donna K. Slonim
Genotype Phenotype Mapping in RNA Viruses - Disjunctive Normal Form Learning
62(12)
Chuang Wu
Andrew S. Walsh
Roni Rosenfeld
Genome-Wide Association Mapping And Rare Alleles: From Population Genomics To Personalized Medicine
Session Introduction
74(2)
Francisco M. De La Vega
Carlos D. Bustamante
Suzanne M. Leal
An Application and Empirical Comparison of Statistical Analysis Methods for Associating Rare Variants to a Complex Phenotype
76(12)
Vikas Bansal
Ondrej Libiger
Ali Torkamani
Nicholas J. Schork
Haplotype Phasing by Multi-Assembly of Shared Haplotypes: Phase-Dependent Interactions Between Rare Variants
88(12)
Bjarni V. Halldorsson. Derek Aguiar
Sorin Istrail
An Evaluation of Power to Detect Low-frequency Variant Associations Using Allele-Matching Tests that Account for Uncertainty
100(6)
Eleftheria Zeggini
Jennifer L. Asimit
Penalized Regression for Genome-wide Association Screening of Sequence Data
106(12)
Hua Zhou
David Alexander
Mary Sehl
Janet Sinsheimer
Kenneth Lange
Microbiome Studies: Understanding How The Dominant Form Of Life Affects Us
Session Introduction
118(3)
James Foster
Jason Moore
Estimating the Number of Species with Catchall
121(10)
John Bunge
A Framework for Analysis of Metagenomic Sequencing Data
131(11)
A. Murat Eren
Michael J. Ferris
Christopher M. Taylor
Visualization and Statistical Comparisons of Microbial Communities Using R Packages on Phylochip Data
142(12)
S. Holmes
A. Alekseyenko
A. Timme
T. Nelson
P.J. Pasricha
A. Spormann
Human Microbiome Visualization Using 3D Technology
154(11)
Jason H. Moore
Richard Cowper-Sal.Lari
Douglas Hill
Patricia Hibberd
Juliette Madan
Comparing Bacterial Communities Inferred from 16S rRNA Gene Sequencing and Shotgun Metagenomics
165(12)
Neethu Shah
Haixu Tang
Thomas G. Doak
Yuzhen Ye
Multi-Scale Modelling Of Biosystems: From Molecular To Mesoscale
Session Introduction
177(4)
Julie Bernauer
Samuel Flores
Xuhui Huang
Seokmin Shin
Ruhong Zhou
Computational Generation Inhibitor-Bound Conformers of P38 Map Kinase and Comparison with Experiments
181(12)
Ahmet Bakan
Ivet Bahar
Molecular Dynamics Simulations of the Full Triple Helical Region of Collagen Type I Provide an Atomic Scale View of the Protein's Regional Heterogeneity
193(12)
Dale L Bodian
Randall J. Radmer
Sean Holbert
Teri E. Klein
Structural Insights Into Pre-Translocation Ribosome Motions
205(12)
Samuel Coulbourn Flores
Russ B. Altman
New Conformational Search Method Using Genetic Algorithm and Knot Theory for Proteins
217(12)
Yoshitake Sakae
Tomoyuki Hiroyasu
Mitsunori Mild
Yuko Okamoto
Personal Genomics
Session Introduction
229(2)
Can Alkan
Emidio Capriotti
Eleazar Eskin
Fereydoun Hormozdiari
Maricel G. Kann
The Reference Human Genome Demonstrates High Risk of Type 1 Diabetes and Other Disorders
231(12)
Rong Chen
Atul J. Butte
Matching Cancer Genomes to Established Cell Lines for Personalized Oncology
243(10)
Joel T. Dudley
Rong Chen
Atul J. Butte
Use of Biological Knowledge to Inform the Analysis of Gene-Gene Interactions Involved in Modulating Virologic Failure with Efavirenz-Containing Treatment Regimens in ART-Naive ACTG Clinical Trials Participants
253(12)
Benjamin J. Grady
Eric C. Torstenson
Paul J. Mclaren
Paul W. De Bakker
David W. Haas
Gregory K. Robbins
Roy M. Gulick
Richard Haubrich
Heather Ribaudo
Marylyn D. Ritchie
Visual Integration of Results from a Large DNA Biobank (BioVU) Using Synthesis-View
265(11)
Sarah Pendergrass
Scott M. Dudek
Dan M. Roden
Dana C. Crawford
Marylyn D. Ritchie
Multivariate Analysis of Regulatory SNPs: Empowering Personal Genomics by Considering Cis-Epistasis and Heterogeneity
276(12)
Stephen D. Turner
William S. Bush
Haplotype Inference from Single Short Sequence Reads Using a Population Genealogical History Model
288(12)
Jin Zhang
Yufeng Wu
Reverse Engineering And Synthesis Of Biomolecular Systems
Session Introduction
300(2)
Gil Alterovitz
Silvio Cavalcanti
Taro M. Muso
Marco F. Ramoni
May Wang
Binary Counting with Chemical Reactions
302(12)
Aleksandra Kharam
Hua Jiang
Marc Riedel
Defining the Players in Higher-Order Networks: Predictive Modeling for Reverse Engineering Functional Influence Networks
314(12)
Jason E. McDermott
Michelle Archuleta
Susan L. Stevens
Mary P. Stenzel-Poore
Antonio Sanfilippo
Rate-Independent Constructs for Chemical Computation
326(12)
Philip Senum
Marc Riedel
Towards Real-Time Control of Gene Expression: Controlling the HOG Signaling Cascade
338(12)
Jannis Uhlendorf
Samuel Bottani
Francois Fages
Pascal Hersen
Gregory Batt
Identibling Targets for Intervention by Analyzing Basins of Attraction
350(12)
Michael P. Verdicchio
Seungchan Kim
Mining The Pharmacogenomics Literature
Workshop Introduction
362(2)
Kevin Bretonnel Cohen
Yael Garten
Udo Hahn
Nigam H. Shah
Identification Of Aberrant Pathway And Network Activity From High-Throughput Data
Workshop Introduction
364(5)
Michael Ochs
Rachel Karchin
Habtom Ressom
Robert Gentleman
Validation And Modeling Of Electron Cryo-Microscopy Structures Of Biological Nanomachines
Workshop Introduction
369
Steven Ludtke
Catherine Lawson
Gerard Kleywegt
Helen Berman
Wah Chiu