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Lecture 1 Introduction: Computer Science Meets Life Science |
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6.1 The Building Blocks of Life |
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6.2.1 From Amino Acids to Protein Structures |
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6.2.2 Tertiary Structure of a Protein |
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6.5.3 Cardiovascular System |
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7 What Is Biomedical Informatics? |
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7.1 Medicine Versus Informatics |
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7.4 Biomedical Informatics |
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8 Future Outlook and Research Avenues |
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8.2 Personalized Medicine |
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9.1 Yes/No Decision Questions |
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9.2 Multiple Choice Questions (MCQ) |
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10.1 Answers to the Yes/No Questions |
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10.2 Answers to the Multiple Choice Questions (MCQ) |
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10.3 Answers to the Free Recall Questions |
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Lecture 2 Fundamentals of Data, Information, and Knowledge |
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5 Data in the Biomedical Domain |
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5.1 Data Sources in Biomedical Informatics |
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5.2 Levels of Data Structures |
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5.3 Abstract Data Structures |
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5.4 Big Data Pools in the Health Domain |
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5.5 Standardization Versus Structurization |
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5.6.1 Multivariate and Multidimensional |
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5.6.2 Point Cloud Datasets |
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6 A Clinical View on Data, Information, Knowledge |
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7 A Closer Look on Information |
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9.2 Multiple Choice Questions (MCQ) |
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9.3 Free Recall Questions |
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10.1 Answers to the Yes/No Questions |
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10.2 Answers to the Multiple Choice Questions (MCQ) |
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10.3 Answers to the Free Recall Questions |
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Lecture 3 Structured Data: Coding and Classification |
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5.1 The Need for Standardization in Medicine |
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5.2 Inaccuracy of Medical Data |
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6 Modeling Biomedical Knowledge |
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8 Medical Classifications |
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10.2 Multiple Choice Questions (MCQ) |
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10.3 Free Recall Questions |
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11.1 Answers to the Yes/No Questions |
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11.2 Answers to the Multiple Choice Questions (MCQ) |
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11.3 Answers to the Free Recall Questions |
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Lecture 4 Biomedical Databases: Acquisition, Storage, Information Retrieval, and Use |
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5 A First View on Hospital Information Systems |
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5.1 Goals and Challenges of Hospital Information Systems |
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6.3 Biomedical Databanks and Cloud Computing |
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7.1 Data Retrieval vs. Information Retrieval |
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7.5 Taxonomy of IR Models |
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7.5.1 Set Theoretic Example: Boolean Model |
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7.5.2 Example Algebraic Model: Vector Space Model |
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7.5.3 Example: Probabilistic Model (Bayes' Rule) |
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9.1 Yes/No Decision Questions |
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9.2 Multiple Choice Questions (MCQ) |
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10.1 Answers to the Yes/No Questions |
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10.2 Answers to the Multiple Choice Questions (MCQ) |
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10.3 Answers to the Free Recall Questions |
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Lecture 5 Semi-structured, Weakly Structured, and Unstructured Data |
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5.3 Weakly Structured Data |
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5.4 On the Topology of Data |
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6 Networks = Graphs + Data |
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6.1 Networks in Biological Systems |
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6.2.1 Basic Concepts of Networks |
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6.2.2 Computational Graph Representation |
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6.2.4 Graphs from Point Cloud Datasets |
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6.3.1 The Human Brain as Network |
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6.3.2 Systems Biology and Human Diseases |
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6.4 The Essence: Three Types of Biomedical Networks |
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6.4.1 Transcriptional Regulatory Networks |
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6.4.2 Protein-Protein Networks |
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6.5 Structural Homologies |
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8.1 Yes/No Decision Questions |
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235 | (1) |
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8.2 Multiple Choice Questions (MCQ) |
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236 | (2) |
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9.1 Answers to the Yes/No Questions |
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9.2 Answers to the Multiple Choice Questions (MCQ) |
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242 | (2) |
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9.3 Answers to the Free Recall Questions |
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Lecture 6 Multimedia Data Mining and Knowledge Discovery |
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256 | (4) |
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5.2 Implicit vs. Explicit Knowledge |
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258 | (1) |
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5.3 Differences Between KDD and DM |
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258 | (2) |
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6 Data Mining Methodologies |
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6.4.1 Artificial Neural Networks |
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6.4.2 Clinical Example: Model for End-Stage Liver Disease |
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6.4.4 Alterative Approach: Support Vector Machines |
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6.5 Text Mining and Semantic Methods |
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6.5.1 Latent Semantic Analysis |
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6.5.2 Latent Dirichlet Allocation |
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6.5.3 Principal Components Analysis |
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279 | (1) |
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280 | (5) |
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285 | (6) |
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8.1 Yes/No Decision Questions |
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285 | (1) |
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8.2 Multiple Choice Questions (MCQ) |
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286 | (2) |
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288 | (3) |
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291 | (8) |
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9.1 Answers to the Yes/No Questions |
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291 | (1) |
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9.2 Answers to the Multiple Choice Questions (MCQ) |
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292 | (1) |
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9.3 Answers to the Free Recall Questions |
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293 | (2) |
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Lecture 7 Knowledge and Decision: Cognitive Science and Human-Computer Interaction |
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5 Human Information Processing |
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302 | (25) |
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5.1 Decision Making and Reasoning |
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302 | (2) |
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5.2 The Three-Storage Memory Model |
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304 | (2) |
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5.2.1 Example: Visual and Audial Information Processing |
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306 | (2) |
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5.2.2 Central Executive System |
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308 | (1) |
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5.2.3 Selective Attention |
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309 | (1) |
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5.3 Clinical Decision-Making Process |
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310 | (2) |
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5.4 Reasoning and Problem-Solving Procedures |
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312 | (1) |
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5.4.1 Hypothetico-deductive Model (HDM) vs. PCDA Deming Wheel |
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5.4.2 Signal Detection Theory |
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316 | (3) |
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5.4.3 Differential Diagnosis |
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319 | (1) |
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5.4.4 Rough Set Theory (RST) |
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320 | (6) |
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5.4.5 Heuristic Decision Making |
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326 | (1) |
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327 | (1) |
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328 | (2) |
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330 | (6) |
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8.1 Yes/No Decision Questions |
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330 | (1) |
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8.2 Multiple Choice Questions (MCQ) |
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331 | (2) |
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333 | (3) |
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336 | (9) |
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9.1 Answers to the Yes/No Questions |
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336 | (1) |
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9.2 Answers to the Multiple Choice Questions (MCQ) |
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337 | (2) |
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9.3 Answers to the Free Recall Questions |
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339 | (2) |
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341 | (4) |
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Lecture 8 Biomedical Decision Making: Reasoning and Decision Support |
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345 | (34) |
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345 | (1) |
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347 | (1) |
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5 Decision Support Systems |
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348 | (12) |
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349 | (1) |
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350 | (3) |
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5.3 Design Principles of DSS |
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353 | (2) |
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355 | (5) |
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360 | (4) |
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364 | (1) |
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365 | (6) |
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8.1 Yes/No Decision Questions |
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365 | (1) |
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8.2 Multiple Choice Questions (MCQ) |
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366 | (2) |
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368 | (3) |
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371 | (8) |
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9.1 Answers to the Yes/No Questions |
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371 | (1) |
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9.2 Answers to the Multiple Choice Questions (MCQ) |
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372 | (2) |
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9.3 Answers to the Free Recall Questions |
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374 | (2) |
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376 | (3) |
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Lecture 9 Interactive Information Visualization and Visual Analytics |
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379 | (42) |
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379 | (1) |
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379 | (2) |
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381 | (1) |
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381 | (1) |
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5 Fundamentals of Visualization Science |
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382 | (11) |
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5.1 Verbal Information Versus Visual Information |
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382 | (3) |
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5.2 Is a Picture Really Worth a Thousand Words? |
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385 | (1) |
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5.3 Informatics as Semiotics Engineering |
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386 | (2) |
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5.4 Visualization Process |
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388 | (4) |
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5.5 The Case of John Snow |
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392 | (1) |
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393 | (10) |
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394 | (1) |
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395 | (4) |
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6.3 Radial Coordinate Visualization |
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399 | (2) |
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401 | (2) |
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403 | (3) |
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406 | (1) |
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407 | (6) |
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9.1 Yes/No Decision Questions |
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407 | (1) |
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9.2 Multiple Choice Questions (MCQ) |
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408 | (2) |
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410 | (3) |
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413 | (8) |
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10.1 Answers to the Yes/No Questions |
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413 | (1) |
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10.2 Answers to the Multiple Choice Questions (MCQ) |
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414 | (2) |
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10.3 Answers to the Free Recall Questions |
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416 | (2) |
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418 | (3) |
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Lecture 10 Biomedical Information Systems and Medical Knowledge Management |
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421 | (38) |
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421 | (1) |
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421 | (2) |
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423 | (1) |
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423 | (1) |
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424 | (8) |
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5.1 Workflow and Decision Support |
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425 | (1) |
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425 | (3) |
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5.3 Example Clinical Workflow |
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428 | (4) |
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5.4 Workflows in Bioinformatics |
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432 | (1) |
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6 Hospital Information Systems |
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432 | (2) |
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433 | (1) |
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6.2 Process-Oriented Information Systems |
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434 | (1) |
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7 Multimedia in the Hospital |
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434 | (8) |
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435 | (1) |
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7.2 Data Standards (DICOM, HL7, LOINC) |
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436 | (6) |
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442 | (3) |
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445 | (6) |
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9.1 Yes/No-Decision Questions |
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445 | (1) |
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9.2 Multiple Choice Questions (MCQ) |
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446 | (2) |
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448 | (3) |
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451 | (8) |
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10.1 Answers to the Yes/No Questions |
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451 | (1) |
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10.2 Answers to the Multiple Choice Questions (MCQ) |
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452 | (2) |
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10.3 Answers to the Free Recall Questions |
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454 | (2) |
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456 | (3) |
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Lecture 11 Biomedical Data: Privacy, Safety, and Security |
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459 | (42) |
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459 | (1) |
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459 | (2) |
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461 | (1) |
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462 | (1) |
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5 Standardization and Health Care |
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463 | (12) |
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463 | (1) |
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464 | (2) |
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466 | (1) |
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5.3.1 Eindhoven Classification Model |
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466 | (1) |
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5.3.2 Adverse Event Reporting |
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467 | (1) |
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468 | (1) |
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468 | (2) |
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470 | (1) |
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5.3.6 Context-Aware Patient Safety |
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471 | (2) |
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5.4 Safety, Security and Technical Dependability |
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473 | (2) |
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475 | (5) |
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7 Private Personal Health Record |
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480 | (6) |
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486 | (1) |
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487 | (6) |
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9.1 Yes/No Decision Questions |
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487 | (1) |
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9.2 Multiple Choice Questions (MCQ) |
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488 | (2) |
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490 | (3) |
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493 | (8) |
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10.1 Answers to the Yes/No Questions |
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493 | (1) |
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10.2 Answers to the Multiple Choice Questions (MCQ) |
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494 | (2) |
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10.3 Answers to the Free Recall Questions |
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496 | (2) |
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498 | (3) |
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Lecture 12 Methodology for Information Systems: System Design, Usability, and Evaluation |
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501 | (46) |
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501 | (1) |
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501 | (4) |
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505 | (1) |
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506 | (1) |
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5 A Framework for Understanding Usability |
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507 | (2) |
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509 | (7) |
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6.1 EU Directive: Medical Device Directive |
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510 | (1) |
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511 | (3) |
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6.3 Quality Management Process Cycle |
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514 | (1) |
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6.4 Software Product Quality Model |
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515 | (1) |
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516 | (9) |
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7.1 Usability Engineering Methods |
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516 | (1) |
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7.2 How to Measure Usability? |
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517 | (1) |
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7.2.1 The System Usability Scale (SUS) |
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517 | (1) |
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7.2.2 The Software Usability Measurement Inventory (SUMI) |
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518 | (1) |
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7.2.3 Usability Measurement Metrics |
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518 | (1) |
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7.3 User-Centered Design and Development |
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519 | (6) |
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525 | (1) |
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526 | (1) |
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527 | (3) |
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530 | (6) |
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11.1 Yes/No Decision Questions |
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530 | (1) |
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11.2 Multiple Choice Questions (MCQ) |
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531 | (2) |
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533 | (3) |
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536 | (11) |
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12.1 Answers to the Yes/No Questions |
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536 | (1) |
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12.2 Answers to the Multiple Choice Questions (MCQ) |
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537 | (2) |
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12.3 Answers to the Free Recall Questions |
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539 | (2) |
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541 | (6) |
Index |
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547 | |