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E-grāmata: Chaperones: Methods and Protocols

  • Formāts: PDF+DRM
  • Sērija : Methods in Molecular Biology 1709
  • Izdošanas datums: 24-Nov-2017
  • Izdevniecība: Humana Press Inc.
  • Valoda: eng
  • ISBN-13: 9781493974771
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  • Formāts: PDF+DRM
  • Sērija : Methods in Molecular Biology 1709
  • Izdošanas datums: 24-Nov-2017
  • Izdevniecība: Humana Press Inc.
  • Valoda: eng
  • ISBN-13: 9781493974771

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This volume is a compilation of laboratory protocols and methodology required for the study of molecular chaperones and the cellular stress response. Chapters detail stress response in Hsf1, Hsf2 and Hsf4 knockout mice, mapping HSP interaction networks, the LUminescence-based Mammalian IntERactome (LUMIER), Hsp70 biology, protein folding activity of Hsp90, cytotoxicity of HSP inhibitors, computational approaches for modeling allosteric Hsp90 interactions, HSPs in immunity and vaccine development , and biologies of Hsp70 and Hsp90. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.

Authoritative and practical, Chaperones: Methods and Protocols aims to ensure successful results in the further study of this vital field.

Preface vii
Contributors xv
1 Targeted Deletion of Hsf1, 2, and 4 Genes in Mice
1(22)
Xiongjie Jin
Binnur Eroglu
Demetrius Moskophidis
Nahid F. Mivechi
2 Role of Heat Shock Factors in Stress-Induced Transcription
23(12)
Ayesha Murshid
Thomas L. Prince
Ben Lang
Stuart K. Calderwood
3 Monitoring of the Heat Shock Response with a Real-Time Luciferase Reporter
35(12)
Toshiki Kijima
Takanori Eguchi
Len Neckers
Thomas L. Prince
4 Quantitative Profiling of Chaperone/Client Interactions with LUMIER Assay
47(12)
Mikko Taipale
5 Measurement of Chaperone-Mediated Effects on Polyglutamine Protein Aggregation by the Filter Trap Assay
59(16)
Maria A.W.H. van Waarde-Verhagen
Harm H. Kampinga
6 Fluorescent-Linked Enzyme Chemoproteomic Strategy (FLECS) for Identifying HSP70 Inhibitors
75(12)
T.A. J. Haystead
7 A High-Throughput Screen for Inhibitors of the Hsp90-Chaperone Machine
87(10)
Jason Davenport
Lakshmi Galam
Robert L. Matts
8 Primary Colorectal Cells Culture as a Translational Research Model
97(10)
Sheah Lin Lee
Nina Claire Dempsey-Hibbert
Dale Vimalachandran
Terence David Wardle
Paul A. Sutton
John H.H. Williams
9 Cell Death and Survival Assays
107(22)
Alexander E. Kabakov
Vladimir L. Gabai
10 Detecting the Potential Pharmacological Synergy of Drug Combination by Viability Assays In Vitro
129(10)
Benjamin K. Gibbs
Carole Sourbier
11 Proteomic Profiling of Hsp90 Inhibitors
139(24)
Sudhakar Voruganti
Jake T. Kline
Maurie J. Balch
Janet Rogers
Robert L. Matts
Steven D. Hartson
12 Analysis of HspB1 (Hsp27) Oligomerization and Phosphorylation Patterns and Its Interaction with Specific Client Polypeptides
163(16)
Andre-Patrick Arrigo
13 Nucleotide Exchange Factors for Hsp70 Chaperones
179(10)
Heike Rampelt
Matthias P. Mayer
Bernd Bukau
14 Determination of Hsp90 Activity Through Activation of Glucocorticoid Receptors in Yeast
189(10)
Michael Reidy
15 Bacterial Hsp90 ATPase Assays
199(10)
Joel R. Hoskins
Sue Wickner
Shannon M. Doyle
16 Detecting Posttranslational Modifications of Hsp90
209(12)
Rebecca A. Sager
Mark R. Woodford
Len Neckers
Mehdi Mollapour
17 Chromatin Immunoprecipitation (ChIP) of Heat Shock Protein 90 (Hsp90)
221(12)
Aneliya Yoveva
Ritwick Sawarkar
18 A Workflow Guide to RNA-seq Analysis of Chaperone Function and Beyond
233(20)
Benjamin J. Lang
Kristina M. Holton
Jianlin Gong
Stuart K. Calderwood
19 Computational Modeling of the Hsp90 Interactions with Cochaperones and Small-Molecule Inhibitors
253(22)
Gennady M. Verkhivker
20 Computational Analysis of the Chaperone Interaction Networks
275(18)
Ashwani Kumar
Kamran Rizzolo
Sandra Zilles
Mohan Babu
Walid A. Houry
21 Immunohistochemistry of Human Hsp60 in Health and Disease: From Autoimmunity to Cancer
293(14)
Francesco Cappello
Everly Conway de Macario
Francesca Rappa
Giovanni Zummo
Alberto J.L. Macario
22 Immunohistochemical and Flow Cytometric Analysis of Intracellular and Membrane-Bound Hsp70, as a Putative Biomarker of Glioblastoma Multiforme, Using the cmHsp70.1 Monoclonal Antibody
307(14)
Stefan Stangl
Gemma A. Foulds
Helena Fellinger
Geoffrey J. Pilkington
A. Graham Pockley
Gabriele Multhoff
23 Detection and Analysis of Extracellular Hsp90 (eHsp90)
321(10)
Stephanie Cortes
Alexander J. Baker-Williams
Mehdi Mollapour
Dimitra Bourboulia
24 Molecular Chaperone Receptors
331(14)
Ayesha Murshid
Jimmy Theriault
Jianlin Gong
Stuart K. Calderwood
25 Creation of Recombinant Chaperone Vaccine Using Large Heat Shock Protein for Antigen-Targeted Cancer Immunotherapy
345(14)
Chunqing Guo
John R. Subjeck
Xiang-Tang Wang
26 A Novel Heat Shock Protein 70-based Vaccine Prepared from DC-Tumor Fusion Cells
359(12)
Desheng Weng
Stuart K. Calderwood
Jianlin Gong
27 Hsp70: A Cancer Target Inside and Outside the Cell
371(26)
Christophe Boudesco
Sebastien Cause
Gaetan Jego
Carmen Garrido
28 Evidence for Hsp90 Co-chaperones in Regulating Hsp90 Function and Promoting Client Protein Folding
397(26)
Marc B. Cox
Jill L. Johnson
29 Clinical Evaluation and Biomarker Profiling of Hsp90 Inhibitors
423(20)
Akira Yuno
Min-Jung Lee
Sunmin Lee
Yusuke Tomita
David Bjekhtman
Brittni Moore
Jane B. Trepel
Index 443