Contributors |
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xi | |
Preface |
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xv | |
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Manipulating Ciliary Protein-Encoding Genes in Tetrahymena thermophila |
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2 | (3) |
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Designing the Targeting Fragment for Gene Disruption |
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5 | (1) |
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Biolistic Transformation Protocol (Germline Gene Knockout) |
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6 | (4) |
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Construction of Gene Knockout Heterokaryons |
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10 | (4) |
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Disruption of Multiple Genes in the Germline |
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14 | (2) |
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Somatic (Macronuclear) Gene Knockout |
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16 | (1) |
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Phenotypic Rescue by Introduction of a Wild-type Gene into a Knockout Strain |
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17 | (5) |
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18 | (4) |
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Approaches for Functional Analysis of Flagellar Proteins in African Trypanosomes |
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22 | (1) |
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23 | (1) |
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24 | (24) |
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48 | (4) |
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52 | (8) |
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53 | (7) |
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Tools for Analyzing Intraflagellar Transport in Trypanosomes |
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60 | (3) |
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63 | (13) |
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76 | (6) |
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78 | (4) |
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Schmidtea mediterranea: A Model System for Analysis of Motile Cilia |
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82 | (2) |
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84 | (10) |
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94 | (2) |
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96 | (4) |
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97 | (3) |
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Targeted Gene Silencing by RNA Interference in Chlamydomonas |
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100 | (2) |
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102 | (3) |
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105 | (3) |
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108 | (4) |
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109 | (3) |
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Analysis of Cargo Transport by IFT and GFP Imaging of IFT in Chlamydomonas |
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112 | (1) |
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Methods for GFP Imaging of IFT Proteins |
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113 | (3) |
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116 | (6) |
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118 | (4) |
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Genetic and Phenotypic Analysis of Flagellar Assembly Mutants in Chlamydomonas reinhardtii |
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122 | (1) |
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Isolation of Aflagellate Strains |
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123 | (1) |
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Isolation of Conditional Flagellar Assembly (fla) Mutants |
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124 | (4) |
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Characterizing Intraflagellar Transport in fla Mutants |
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128 | (4) |
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132 | (7) |
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Characterization of Genetic Interactions |
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139 | (7) |
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141 | (5) |
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Recording and Analyzing IFT in Chlamydomonas Flagella |
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146 | (1) |
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146 | (8) |
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154 | (4) |
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155 | (3) |
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Total Internal Reflection Fluorescence (TIRF) Microscopy of Chlamydomonas Flagella |
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158 | (1) |
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Rationale: A History of Flagellar Microscopy in Chlamydomonas |
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159 | (7) |
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Materials and Methods: Technical Considerations of Chlamydomonas TIRF |
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166 | (4) |
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Discussion: Future Prospects for Chlamydomonas TIRF |
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170 | (4) |
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174 | (6) |
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174 | (6) |
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Purification of IFT Particle Proteins and Preparation of Recombinant Proteins for Structural and Functional Analysis |
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180 | (1) |
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Isolating IFT Particle Proteins from Chlamydomonas Flagella |
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181 | (10) |
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Recombinant IFT Particle Proteins |
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191 | (3) |
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Summary and Concluding Remarks |
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194 | (4) |
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195 | (3) |
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Studying Cilia in Zebrafish |
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198 | (17) |
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215 | (5) |
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215 | (5) |
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Analysis of IFT Kinesins in Developing Zebrafish Cone Photoreceptor Sensory Cilia |
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220 | (2) |
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Comparison of Photoreceptor Model Systems |
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222 | (1) |
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Zebrafish as a Model for Analysis of Photoreceptor IFT |
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223 | (1) |
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223 | (2) |
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Antisense Morpholino Oligonucleotides |
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225 | (1) |
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Transient Transgenesis Using Photoreceptor-Specific Promoters |
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226 | (3) |
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229 | (2) |
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Transmission Electron Microscopy |
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231 | (5) |
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232 | (4) |
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Analysis of Intraflagellar Transport in C. elegans Sensory Cilia |
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236 | (9) |
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245 | (5) |
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250 | (9) |
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259 | (1) |
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260 | (2) |
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262 | (6) |
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262 | (6) |
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Functional Genomics of Intraflagellar Transport-Associated Proteins in C. elegans |
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268 | (11) |
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Identification of Novel IFT-Associated and Ciliary Proteins |
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279 | (2) |
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Characterization of Candidate and Known IFT-Associated Proteins |
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281 | (17) |
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298 | (8) |
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299 | (7) |
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Generating Conditional Mutants to Analyze Ciliary Functions: The Use of Cre-Lox Technology to Disrupt Cilia in Specific Organs |
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306 | (1) |
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The Design of a Conditional Targeted Allele |
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307 | (6) |
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ES Clone Selection and Manipulation |
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313 | (2) |
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315 | (1) |
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316 | (3) |
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319 | (1) |
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Conditional Alleles in Cilia Biology |
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320 | (1) |
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321 | (11) |
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328 | (4) |
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Imaging Intraflagellar Transport in Mammalian Primary Cilia |
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332 | (2) |
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334 | (1) |
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Methods for Generation and Characterization of IFT/GFP Fusion Cell Lines |
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335 | (4) |
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Live Imaging of Mammalian IFT |
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339 | (6) |
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345 | (3) |
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345 | (3) |
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Analysis of Hedgehog Signaling in Mouse Intraflagellar Transport Mutants |
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Jonathan T. Eggenschwiler |
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348 | (2) |
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350 | (10) |
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360 | (4) |
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364 | (2) |
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366 | (5) |
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366 | (5) |
Index |
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371 | (12) |
Volume in Series |
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383 | |