Acknowledgments |
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xv | |
Preface |
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xvii | |
Introduction |
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xxiii | |
Abbreviations and Definitions |
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xxvii | |
Biographies |
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xxxi | |
1 Origins of Drugs |
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1 | (1) |
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2 | (6) |
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III The 20 Classical Amino Acids |
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8 | (3) |
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11 | (10) |
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V Estimating Human Dose from Animal Studies |
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21 | (3) |
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VI Origin of Drugs that are Biosimilars |
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24 | (1) |
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VII Origin of Drugs that are Orphan Drugs |
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25 | (4) |
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29 | (2) |
2 Clinical Trial Design |
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I Introduction to Regulated Clinical Trials |
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31 | (4) |
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35 | (1) |
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36 | (22) |
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IV Further Concepts in Clinical Trial Design |
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58 | (7) |
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V FDA's Decision-Making Processes Regarding Dose Modification and Discontinuation |
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65 | (1) |
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VI Amendments to the Clinical Study Protocol |
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66 | (2) |
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68 | (1) |
3 Run-in Period |
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69 | (9) |
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II FDA's Decision-Making Processes in Evaluating Run-in Period |
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78 | (2) |
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80 | (3) |
4 Inclusion/Exclusion Criteria, Stratification, and Subgroups-Part I |
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I The Clinical Study Protocol is a Manual that Provides the Study Design |
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83 | (14) |
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II Biochemistry of Drug Resistance |
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97 | (5) |
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III FDA's Warning Letters and Inclusion/Exclusion Criteria |
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102 | (1) |
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IV Subgroups and Subgroup Analysis |
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103 | (5) |
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V FDA's Decision-Making Processes in Evaluating Stratification and Subgroups |
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108 | (5) |
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113 | (2) |
5 Inclusion/Exclusion Criteria, Stratification, and Subgroups-Part II |
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115 | (1) |
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115 | (6) |
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III Staging Systems for Various Cancers |
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121 | (7) |
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IV The Will Rogers Phenomenon |
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128 | (3) |
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V Other Sources of Artifacts in Data from Clinical Trials |
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131 | (1) |
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131 | (2) |
6 Blinding, Randomization, and Allocation |
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133 | (3) |
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II Logistics of Keeping Track of Study Subjects |
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136 | (6) |
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III Blocked Randomization |
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142 | (2) |
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IV Clinical Study Protocol Randomization Instructions |
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144 | (1) |
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V Instructions for Unblinding |
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145 | (2) |
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147 | (1) |
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148 | (1) |
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VIII Interactive Voice Response Systems |
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149 | (4) |
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153 | (2) |
7 Placebo Arm as Part of Clinical Trial Design |
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155 | (1) |
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156 | (1) |
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157 | (1) |
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IV Physical Aspects of the Placebo |
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157 | (1) |
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158 | (1) |
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VI Subjects in the Placebo Arm May Receive Best Supportive Care or Palliative Care |
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158 | (2) |
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VII Clash Between BSC and the Endpoint of HRQoL |
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160 | (1) |
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160 | (5) |
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IX FDA's Decision-Making Process in Evaluating the Placebo Arm |
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165 | (4) |
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169 | (4) |
8 Intent-to-Treat Analysis versus Per Protocol Analysis |
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173 | (3) |
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II ITT Analysis Contrasted With PP Analysis |
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176 | (3) |
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III Disadvantages of ITT Analysis |
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179 | (1) |
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IV Run-In Period, as Part of the Study Design, is Relevant to ITT Analysis and PP Analysis |
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180 | (1) |
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180 | (1) |
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VI Hypothetical Example Where Study Drug and Control Drug Have the Same Efficacy |
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181 | (1) |
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VII Modified ITT Analysis |
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181 | (11) |
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VIII Start Date for Endpoints in Clinical Trials |
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192 | (2) |
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IX FDA's Decision-Making Processes, Relating to ITT Analysis and PP Analysis |
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194 | (6) |
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200 | (3) |
9 Biostatistics-Part I |
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203 | (5) |
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II Definitions and Formulas |
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208 | (1) |
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III Data from the Study of Machin and Gardner |
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209 | (1) |
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IV Data Used for Constructing the Kaplan-Meier Plot are from Subjects Enrolling at Different Times |
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210 | (1) |
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V Sample versus Population |
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211 | (1) |
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212 | (1) |
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VII One-Tailed Test versus Two-Tailed Test |
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212 | (2) |
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214 | (2) |
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IX Calculating the P Value-A Working Example |
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216 | (6) |
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222 | (1) |
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XI Theory Behind the Z Value and the Table of Areas in Tail of the Standard Normal Distribution |
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222 | (1) |
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XII Statistical Analysis by Superiority Analysis versus by Noninferiority Analysis |
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223 | (4) |
10 Biostatistics-Part II |
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227 | (1) |
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II Discussions that Impact Sample Size Determination |
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227 | (3) |
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III Statistical Terms Commonly Used in Sample Size Calculations |
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230 | (1) |
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IV Null and Alternative Hypotheses |
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230 | (1) |
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V Degree of Certainty: Alpha and Beta |
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231 | (1) |
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VI Statistical Methods for Determining Trial Size |
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231 | (1) |
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VII Continuous Variables: Testing the Difference Between Two Means |
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231 | (3) |
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VIII Changes in Sample Size Assumptions can Yield Dramatic Changes to Sample Size |
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234 | (1) |
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IX Changing Assumptions About Alpha or Beta |
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235 | (1) |
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X Changing Assumptions About Theta |
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236 | (1) |
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XI Binary Variables: Testing the Difference Between Two Proportions |
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237 | (2) |
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XII Time to Event Variables: Testing for Differences Between Two Groups Using the Logrank Test |
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239 | (2) |
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XIII Binary Variable: Testing for Equivalence of Two Proportions |
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241 | (2) |
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XIV Other Helpful Considerations |
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243 | (1) |
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XV Writing a Sample Size Section of a Clinical Study Protocol |
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244 | |
11 Introduction to Endpoints |
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I FDA's Guidance for Industry |
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247 | (6) |
12 Oncology Endpoint-Objective Response |
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I Introduction to Endpoints in Oncology Clinical Trials |
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253 | (9) |
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II Studies Characterizing an Association Between Objective Response and Survival |
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262 | (1) |
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III Avoiding Confusion When Using Objective Response as an Endpoint |
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263 | (3) |
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IV FDA's Decision-Making Process in Evaluating Objective Response |
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266 | (2) |
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268 | (1) |
13 Oncology Endpoints: Overall Survival and Progression-Free Survival |
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269 | (3) |
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II Advantages of PFS Over Overall Survival |
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272 | (2) |
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III Advantages of Overall Survival Over PFS |
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274 | (1) |
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IV Guidance From Clinical Trials on Using Endpoints |
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275 | (12) |
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287 | (2) |
14 Oncology Endpoints: Time to Progression |
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289 | (1) |
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II Agreement of Results from Objective Response, TTP, and Overall Survival-The Paccagnella Study |
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290 | (1) |
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III Can the Value for PFS be Less Than the Value for TTP? |
|
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290 | (1) |
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IV Data on the Endpoint of TTP can be Used to Gain FDA-Approval |
|
|
291 | (1) |
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V TTP may be the Preferred Endpoint Where, Once the Trial is Concluded, Patients Receive Additional Chemotherapy-The Park Study |
|
|
291 | (1) |
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VI The Endpoint of TTP may be Preferred Over Survival Endpoints, Where Deaths Result from Causes Other Than Cancer-The Llovet Study |
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292 | (3) |
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VII The Endpoint of Overall Survival may be Preferred Over Objective Response or Over TTP, Where the Drug Is Classed as a Cytostatic Drug-The Llovet Study |
|
|
295 | (1) |
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VIII TTP may Show Efficacy, Where the Endpoint of Overall Survival Fails to Show Efficacy, Where the Number of Subjects is Small-The McDermott Study |
|
|
296 | (1) |
|
IX TTP may Show Efficacy, Where the Endpoint of Overall Survival Failed to Show Efficacy, Where the Duration of the Trial was Too Short-The Cappuzzo Study |
|
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297 | (1) |
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X Methodology Tip-Advantage of Using an Endpoint that Incorporates a "Median" Tune |
|
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298 | (1) |
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298 | (1) |
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XII Thymidine Phosphorylase as a Biomarker for Survival-The Meropol Study |
|
|
299 | (1) |
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XIII Drug Combinations that Include Capecitabine |
|
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300 | (1) |
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XIV Methodology Tip-Do Changes in mRNA Expression Result in Corresponding Changes in Expression of Polypeptide? |
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300 | (1) |
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|
301 | (2) |
15 Oncology Endpoint: Disease-Free Survival |
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|
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303 | (1) |
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II Difference Between DFS and PFS |
|
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304 | (1) |
|
III Ambiguity in the Name of the Endpoint, "DFS" |
|
|
304 | (1) |
|
IV Disease-Free Survival Provides Earlier Results on Efficacy Than Overall Survival-The Add-On Breast Cancer Study of Romond |
|
|
305 | (2) |
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V Disease-Free Survival as an Endpoint in the Analysis of Subgroups-The Add-On Breast Cancer Study of Hayes |
|
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307 | (1) |
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VI Neoadjuvant Therapy versus Adjuvant Therapy for Rectal Cancer-The Roh Study |
|
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308 | (1) |
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VII Where Efficacy of Two Different Treatments is the Same, Choice of Treatment Shifts to the Treatment that Improves Quality of Life-The Ring Study |
|
|
309 | (1) |
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VIII DFS and Overall Survival are Useful Tools for Testing and Validating Prognostic Biomarkers-The Bepler Study |
|
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310 | (1) |
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IX FDA's Decision-Making Process in Evaluating the Endpoint of DFS |
|
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311 | (1) |
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|
312 | (1) |
16 Oncology Endpoint: Time to Distant Metastasis |
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|
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313 | (1) |
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II TDM Data are Acquired Before Overall Survival Data are Acquired-The Wee Study |
|
|
314 | (1) |
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III Time to Distant Metastasis Data can Reveal a Dramatic Advantage of the Study Drug, in a Situation Where Overall Survival Fails to Show Any Advantage-The Roach Study |
|
|
315 | (2) |
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IV Use of a Gene Array as a Prognostic Factor for Breast Cancer Patients, Using the Endpoint of TDM-The Loi Study |
|
|
317 | (1) |
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V Use of Micro-RNA Expression Data as a Prognostic Factor for Breast Cancer Patients-The Foekens Study |
|
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317 | (1) |
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318 | (1) |
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|
319 | (4) |
17 Neoadjuvant Therapy versus Adjuvant Therapy |
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I Advantages of Neoadjuvant Therapy |
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323 | (3) |
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II Advantages of Adjuvant Therapy |
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326 | (1) |
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III Two Meanings of the Word Adjuvant |
|
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327 | (1) |
|
IV Summary of Neoadjuvant Versus Adjuvant Therapy in Cancer |
|
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328 | (1) |
|
V Induction Therapy versus Maintenance Therapy in Autoimmune Diseases |
|
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328 | (2) |
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330 | (1) |
18 Hematological Cancers |
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331 | (17) |
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II Myelodysplastic Syndromes |
|
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348 | (6) |
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354 | (1) |
|
IV Cytogenetics of Hematological Cancers |
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354 | (9) |
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V Chromosomal Abnormalities in Solid Tumors |
|
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363 | (1) |
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VI Endpoints in Hematological Cancers |
|
|
364 | (3) |
|
VII Cytogenetics as a Prognostic Marker-The Greyer Study of CLL |
|
|
367 | (1) |
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VIII Minimal Residual Disease |
|
|
368 | (7) |
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IX Confluence of Cytogenetics and Gene Expression |
|
|
375 | (1) |
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|
375 | (2) |
19 Biomarkers |
|
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377 | (13) |
|
II Methodology Tip-Microarrays |
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390 | (4) |
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|
394 | (6) |
|
IV Biomarkers-Specialized Topics |
|
|
400 | (3) |
|
V Exploring New Types of Biomarkers |
|
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403 | (5) |
|
VI Single Nucleotide Polymorphisms |
|
|
408 | (3) |
|
VII Validating Biomarkers |
|
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411 | (2) |
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VIII Biomarker Validation from FDA Submissions for In Vitro Diagnostics Tests |
|
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413 | (5) |
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418 | (3) |
20 Endpoints for Immune Diseases |
|
|
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421 | (1) |
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II Subsets of Multiple Sclerosis |
|
|
421 | (13) |
|
III FDA's Decision-Making Process in Evaluating Endpoints for Multiple Sclerosis |
|
|
434 | (2) |
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|
436 | (1) |
21 Endpoints for Infections |
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|
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437 | (1) |
|
II Clinical and Immunological Features of HCV Infections |
|
|
437 | (1) |
|
III Acute HCV versus Chronic HCV |
|
|
438 | (1) |
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|
439 | (3) |
|
V Immune Responses Against HCV |
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442 | (1) |
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VI Kinetics of HCV Infections |
|
|
443 | (3) |
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VII Responders versus Nonresponders |
|
|
446 | (1) |
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VIII Endpoints in Clinical Trials Against HCV |
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447 | (3) |
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|
450 | (1) |
22 Health-Related Quality of Life Tools-Oncology |
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|
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451 | (2) |
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|
453 | (1) |
|
III HRQoL Tools Take on Increased Importance When Capturing Data on Adverse Events, or in Trials on Palliative Treatments |
|
|
454 | (1) |
|
IV Scheduling the Administration of HRQoL Tools |
|
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455 | (1) |
|
V HRQoL Tools in Oncology |
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455 | (12) |
|
VI Decisions on Counseling; Decisions on Chemotherapy versus Surgery |
|
|
467 | (1) |
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|
467 | (2) |
23 Health-Related Quality-of-Life Tools-Immune Disorders |
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469 | (1) |
|
II Short Form SF-36 Questionnaire |
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|
469 | (4) |
|
III HRQoL Instruments Specific for Multiple Sclerosis |
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|
473 | (4) |
|
|
477 | (2) |
24 Health-Related Quality-of-Life Tools-Infections |
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|
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479 | (1) |
|
II HRQoL Tools With Chronic HCV |
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|
480 | (3) |
25 Drug Safety |
|
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|
483 | (9) |
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|
492 | (10) |
|
III QT Interval Prolongation |
|
|
502 | (12) |
|
IV Stevens-Johnson Syndrome |
|
|
514 | (2) |
|
V Idiosyncratic Drug Reactions |
|
|
516 | (2) |
|
VI FDA's Decision-Making Process in Evaluating Adverse Events |
|
|
518 | (1) |
|
VII Drug-Induced Liver Injury |
|
|
519 | (3) |
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|
522 | (3) |
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IX Paradoxical Adverse Drug Reactions |
|
|
525 | (4) |
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X Capturing Adverse Events |
|
|
529 | (6) |
|
XI FDA's Warning Letters About Failure to Report SAES |
|
|
535 | (3) |
|
XII Drugs that Create Risk for Infections |
|
|
538 | (3) |
|
XIII FDA's Decision-Making Process on Adverse Events that Appear Irrelevant to the Study Drug |
|
|
541 | (1) |
|
XIV Postmarketing Reporting of Adverse Events |
|
|
542 | (4) |
|
XV Risk Minimization Tools |
|
|
546 | (7) |
|
XVI FDA's Decision-Making Process in Evaluating Risk Minimization Tools |
|
|
553 | (4) |
|
XVII European Union's Risk Management Tools |
|
|
557 | (1) |
|
|
558 | (1) |
|
XIX Patient-Reported Outcome |
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|
558 | (2) |
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XX Summary of Reporting Systems |
|
|
560 | (1) |
|
XXI Data and Safety Monitoring Committee |
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|
561 | (7) |
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|
568 | (1) |
26 Mechanism of Action of Diseases and Drugs-Part I |
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|
|
569 | (2) |
|
II MOA and the Package Insert |
|
|
571 | (1) |
|
III MOA and Surrogate Endpoints |
|
|
571 | (1) |
|
IV MOA and Expected Adverse Drug Reactions |
|
|
572 | (1) |
|
V FDA's Warning Letter Regarding Assessing Safety of the Study Drug, According to Its Membership in a Particular Class of Drugs |
|
|
572 | (1) |
|
VI MOA and Drug Combinations |
|
|
573 | (1) |
|
VII MOA of Diseases With an Immune Component |
|
|
574 | (5) |
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VIII Immune System Pathology in Inflammatory Disorders |
|
|
579 | (3) |
|
IX Cells of the Immune System |
|
|
582 | (2) |
|
X Drugs that Modulate the Immune System |
|
|
584 | (6) |
|
XI Immunology can be Organized as Pairs of Concepts |
|
|
590 | (4) |
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|
594 | (1) |
27 Mechanism of Action-Part II (Cancer) |
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595 | (12) |
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|
607 | (2) |
|
|
609 | (2) |
28 Mechanism of Action-Part III (Immune Disorders) |
|
|
|
611 | (5) |
|
II Detailed Mechanism of Action of Multiple Sclerosis |
|
|
616 | (8) |
|
III Animal Models of Multiple Sclerosis |
|
|
624 | (1) |
|
IV Etiology and Mechanisms of Multiple Sclerosis |
|
|
625 | (3) |
|
V Diagram of Multiple Sclerosis Mechanism |
|
|
628 | (1) |
|
VI Additional Mechanisms of Action in Multiple Sclerosis |
|
|
629 | (4) |
|
|
633 | (2) |
29 Mechanisms of Action-Part IV (Infections) |
|
|
|
635 | (1) |
|
|
635 | (2) |
|
|
637 | (1) |
|
IV Initiating Biosynthesis of the HCV Polypeptide |
|
|
638 | (1) |
|
V Membranous Web and Lipid Droplet |
|
|
638 | (1) |
|
|
639 | (1) |
|
VII NS5A-HCV's Recruiting and Assembly Protein |
|
|
639 | (2) |
|
VIII NS5B-HCV's RNA Polymerase |
|
|
641 | (1) |
|
IX E1 and E2-HCV's Envelope Proteins |
|
|
642 | (1) |
|
|
642 | (1) |
|
XI Innate Immune Response Against HCV |
|
|
643 | (2) |
|
|
645 | (2) |
|
XIII Oncogenes and Growth Factors |
|
|
647 | (3) |
|
XIV Acquired Immune Response Against HCV |
|
|
650 | (11) |
|
|
661 | (2) |
30 Consent Forms |
|
|
|
663 | (3) |
|
II Sources of the Law in the United States |
|
|
666 | (1) |
|
III Guidance for Industry |
|
|
666 | (2) |
|
IV Distinction Between Stopping Treatment and Withdrawing From the Study |
|
|
668 | (1) |
|
|
668 | (1) |
|
|
669 | (1) |
|
VII Basis for Consent Forms in the CFR |
|
|
669 | (2) |
|
|
671 | (1) |
|
IX Examples of Contemporary Consent Forms |
|
|
671 | (9) |
|
X Ethical Issues Specific to Phase I Clinical Trials in Oncology |
|
|
680 | (1) |
|
|
680 | (3) |
|
|
683 | (3) |
|
|
686 | (3) |
31 Package Inserts |
|
|
|
689 | (6) |
|
II Drug-Drug Interactions |
|
|
695 | (6) |
|
III FDA's Decision-Making Process in Evaluating Drug-Drug Interactions |
|
|
701 | (5) |
|
IV Summary of Drug-Drug Interactions |
|
|
706 | (1) |
|
V Animal Toxicity Data and the Package Insert |
|
|
706 | (2) |
|
|
708 | (1) |
|
VII Brand Names, Chemical Names, Packaging |
|
|
708 | (3) |
|
VIII Ambiguous Writing on Package Inserts |
|
|
711 | (1) |
|
IX Package Insert May Protect Manufacturer From Liability |
|
|
712 | (4) |
|
X Package Insert Compared With Consent Form |
|
|
716 | (1) |
|
XI Relation Between Package Inserts to the Standard of Care, and to Off-Label Uses |
|
|
716 | (2) |
|
|
718 | (1) |
32 Warning Letters |
|
|
|
719 | (1) |
|
|
720 | (1) |
|
III Warning Letter Describing Authority of FDA Inspectors |
|
|
720 | (1) |
|
IV Anecdotal Description of an FDA Inspection, FDA's Requirements for Record Keeping During Drug Manufacture, and Guidance for Responding to FDA's Complaints |
|
|
721 | (1) |
|
V FDA's Warning Letter Distinguished from FDA's Form 483 Notice |
|
|
722 | (3) |
|
VI Warning Letter on Corrective Responses, by Sponsor, for a Tumor Clinical Trial |
|
|
725 | (1) |
|
|
726 | (1) |
|
VIII Failure of Sponsor to have an FDA-approved IND |
|
|
727 | (2) |
|
IX Institutional Review Board |
|
|
729 | (16) |
|
|
745 | (1) |
|
XI Data Monitoring Committee (DMC) |
|
|
746 | (3) |
|
|
749 | (5) |
|
|
754 | (1) |
|
XIV Concomitant Medications |
|
|
755 | (2) |
|
XV Inclusion/Exclusion Criteria |
|
|
757 | (1) |
|
XVI Drug Accountability, Drug Storage, Drug Dispensing, and Record Keeping |
|
|
757 | (5) |
|
XVII Withdrawal of Subjects From the Clinical Trial |
|
|
762 | (4) |
|
XVIII Contract Research Organizations |
|
|
766 | (3) |
|
|
769 | (3) |
|
XX Investigator's Brochure |
|
|
772 | (1) |
|
|
772 | (6) |
|
|
778 | (3) |
33 Regulatory Approval |
|
|
I Origins of the Federal Food, Drug and Cosmetic Act and Its Amendments |
|
|
781 | (1) |
|
II Federal Food, Drug and Cosmetic Act of 1938 |
|
|
782 | (2) |
|
III Drug Amendments Act of 1962 |
|
|
784 | (1) |
|
IV FDA Modernization Act of 1997 and Phase IV Clinical Trials |
|
|
784 | (1) |
|
V History of European Medicines Agency |
|
|
785 | (2) |
|
VI International Conference on Harmonisation |
|
|
787 | (1) |
|
VII History of the Medicines and Healthcare Products Regulatory Agency |
|
|
788 | (1) |
|
VIII Outline of Regulatory Approval in the United States |
|
|
789 | (1) |
|
IX Investigational New Drug |
|
|
790 | (3) |
|
X IND and the Common Technical Document |
|
|
793 | (3) |
|
XI Institutional Review Board |
|
|
796 | (2) |
|
XII Timeline of FDA Approval |
|
|
798 | (5) |
|
XIII Special Protocol Assessment |
|
|
803 | (1) |
|
XIV Target Product Profile |
|
|
804 | (1) |
|
XV Company Core Data Sheet |
|
|
805 | (1) |
|
|
806 | (2) |
|
|
808 | (2) |
|
|
810 | (1) |
|
XIX Exemplary Account of FDA Timeline, After Submission of NDA or BLA |
|
|
811 | (1) |
|
|
812 | (2) |
|
XXI FDA Feedback at Time of Issue of the FDA Approval Letter |
|
|
814 | (6) |
|
XXII Processes of Administering Clinical Trials |
|
|
820 | (9) |
34 Patents |
|
|
|
829 | (1) |
|
II Services Provided by the Patent Attorney or Agent |
|
|
829 | (3) |
|
|
832 | (2) |
|
IV Outline of the Patenting Process |
|
|
834 | (2) |
|
V Types of Patent Documents |
|
|
836 | (1) |
|
VI Organization of Information in a Patent |
|
|
837 | (2) |
|
VII Time-line for Patenting |
|
|
839 | (2) |
|
VIII Provisional Patent Applications |
|
|
841 | (1) |
|
IX Sources of the Law for Patenting |
|
|
842 | (3) |
|
X Intersections Between the FDA Review Process and Patents |
|
|
845 | (2) |
Index |
|
847 | |