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E-grāmata: Combinatorial Pattern Matching: 23rd Annual Symposium, CPM 2012, Helsinki, Finland, July 3-5, 2012, Proceedings

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This book constitutes the refereed proceedings of the 23rd Annual Symposium on Combinatorial Pattern Matching, CPM 2012, held in Helsinki, Finland, in July 2012. The 33 revised full papers presented together with 2 invited talks were carefully reviewed and selected from 60 submissions. The papers address issues of searching and matching strings and more complicated patterns such as trees, regular expressions, graphs, point sets, and arrays. The goal is to derive non-trivial combinatorial properties of such structures and to exploit these properties in order to either achieve superior performance for the corresponding computational problems or pinpoint conditions under which searches cannot be performed efficiently. The meeting also deals with problems in computational biology, data compression and data mining, coding, information retrieval, natural language processing, and pattern recognition.
Invited Talks
Gene Regulation, Protein Networks and Disease: A Computational Perspective
1(1)
Ron Shamir
Wavelet Trees for All
2(25)
Gonzalo Navarro
Contributed Papers
The Maximum Number of Squares in a Tree
27(14)
Maxime Crochemore
Costas S. Iliopoulos
Tomasz Kociumaka
Marcin Kubica
Jakub Radoszewski
Wojciech Rytter
Wojciech Tyczynski
Tomasz Walen
Faster and Simpler Minimal Conflicting Set Identification (Extended Abstract)
41(15)
Aida Ouangraoua
Mathieu Raffinot
Partitioning into Colorful Components by Minimum Edge Deletions
56(14)
Sharon Bruckner
Falk Huffner
Christian Komusiewicz
Rolf Niedermeier
Sven Thiel
Johannes Uhlmann
Approximation Algorithms and Hardness Results for Shortest Path Based Graph Orientations
70(13)
Dima Blokh
Danny Segev
Roded Sharan
Constant-Time Word-Size String Matching
83(14)
Dany Breslauer
Leszek Gasieniec
Roberto Grossi
Pattern Matching in Multiple Streams
97(13)
Raphael Clifford
Markus Jalsenius
Ely Porat
Benjamin Sach
An Efficient Linear Pseudo-minimization Algorithm for Aho-Corasick Automata
110(14)
Omar AitMous
Frederique Bassino
Cyril Nicaud
Efficient Two-Dimensional Pattern Matching with Scaling and Rotation and Higher-Order Interpolation
124(14)
Christian Hundt
Florian Wendland
Hardness of Longest Common Subsequence for Sequences with Bounded Run-Lengths
138(11)
Guillaume Blin
Laurent Bulteau
Minghui Jiang
Pedro J. Tejada
Stephane Vialette
Near Linear Time Construction of an Approximate Index for All Maximum Consecutive Sub-sums of a Sequence
149(10)
Ferdinando Cicalese
Eduardo Laber
Oren Weimann
Raphael Yuster
The Complexity of String Partitioning
159(14)
Anne Condon
Jan Manuch
Chris Thachuk
Towards an Optimal Space-and-Query-Time Index for Top-k Document Retrieval
173(12)
Wing-Kai Hon
Rahul Shah
Sharma V. Thankachan
Document Listing for Queries with Excluded Pattern
185(11)
Wing-Kai Hon
Rahul Shah
Sharma V. Thankachan
Jeffrey Scott Vitter
Cross-Document Pattern Matching
196(12)
Gregory Kucherov
Yakov Nekrich
Tatiana Starikovskaya
FEMTO: Fast Search of Large Sequence Collections
208(12)
Michael P. Ferguson
Speeding Up q-Gram Mining on Grammar-Based Compressed Texts
220(12)
Keisuke Goto
Hideo Bannai
Shunsuke Inenaga
Masayuki Takeda
Simple and Efficient LZW-Compressed Multiple Pattern Matching
232(11)
Pawel Gawrychowski
Computing the Burrows-Wheeler Transform of a String and Its Reverse
243(14)
Enno Ohlebusch
Timo Beller
Mohamed I. Abouelhoda
Efficient Algorithm for Circular Burrows-Wheeler Transform
257(12)
Wing-Kai Hon
Tsung-Han Ku
Chen-Hua Lu
Rahul Shah
Sharma V. Thankachan
Least Random Suffix/Prefix Matches in Output-Sensitive Time
269(11)
Niko Valimaki
Compressed String Dictionary Look-Up with Edit Distance One
280(13)
Djamal Belazzougui
Rossano Venturini
Time-Space Trade-Offs for Longest Common Extensions
293(13)
Philip Bille
Inge Li Gortz
Benjamin Sach
Hjalte Wedel Vildhøj
Local Exact Pattern Matching for Non-fixed RNA Structures
306(15)
Mika Amit
Rolf Backofen
Steffen Heyne
Gad M. Landau
Mathias Mohl
Christina Schmiedl
Sebastian Will
Impact of the Energy Model on the Complexity of RNA Folding with Pseudoknots
321(13)
Saad Sheikh
Rolf Backofen
Yann Ponty
Finding Longest Common Segments in Protein Structures in Nearly Linear Time
334(15)
Yen Kaow Ng
Hirotaka Ono
Ling Ge
Shuai Cheng Li
A Linear Kernel for the Complementary Maximal Strip Recovery Problem
349(11)
Haitao Jiang
Binhai Zhu
Efficient Exponential Time Algorithms for Edit Distance between Unordered Trees
360(13)
Tatsuya Akutsu
Takeyuki Tamura
Daiji Fukagawa
Atsuhiro Takasu
Fixed-Parameter Algorithms for Finding Agreement Supertrees
373(12)
David Fernandez-Baca
Sylvain Guillemot
Brad Shutters
Sudheer Vakati
Computing the Rooted Triplet Distance between Galled Trees by Counting Triangles
385(14)
Jesper Jansson
Andrzej Lingas
Minimum Leaf Removal for Reconciliation: Complexity and Algorithms
399(14)
Riccardo Dondi
Nadia El-Mabrouk
On the Closest String via Rank Distance
413(14)
Liviu P. Dinu
Alexandru Popa
On Approximating String Selection Problems with Outliers
427(12)
Christina Boucher
Gad M. Landau
Avivit Levy
David Pritchard
Oren Weimann
The Parameterized Complexity of the Shared Center Problem
439(14)
Zhi-Zhong Chen
Lusheng Wang
Wenji Ma
Author Index 453