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E-grāmata: Computational Inorganic and Bioinorganic Chemistry

Edited by (Monroe E. Spaght Professor), Edited by (University of Georgia), Edited by (University of Georgia)
  • Formāts: EPUB+DRM
  • Sērija : EIC Books
  • Izdošanas datums: 19-Feb-2013
  • Izdevniecība: John Wiley & Sons Inc
  • Valoda: eng
  • ISBN-13: 9781118617243
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  • Formāts: EPUB+DRM
  • Sērija : EIC Books
  • Izdošanas datums: 19-Feb-2013
  • Izdevniecība: John Wiley & Sons Inc
  • Valoda: eng
  • ISBN-13: 9781118617243
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"Over the past several decades there have been major advances in our ability to evaluate computationally the electronic structure of inorganic molecules, particularly transition metal systems. This advancement is due to the Moore's Law increase in computing power as well as the impact of density functional theory (DFT) and its implementation in commercial and freeware programs for quantum chemical calculations. Improved pure and hybrid density functionals are allowing DFT calculations with accuracy comparable to high-level Hartree-Fock treatments, and the results of these calculations can now be evaluated based on experiment. When calculations are correlated to and supported by experimental data they can provide fundamental insight into electronic structure and its contributions to physical properties and chemical reactivity. This interplay continues to expand and contributes to both improved value of experimental results and improved accuracy of computational predictions. The purpose of this EIC Book is to provide state-of-the-art presentations of quantum mechanical and related methods and their applications by many of the leaders in the field. Part One of this volume focuses on methods, their background and implementation, and their use in describing bonding properties, energies, transition states and spectroscopic features. Part Two focuses on applications in bioinorganic chemistry and Part Three discusses inorganic chemistry, where electronic structure calculations have already had a major impact. This addition to the EIC Book series is of significant value to both experimentalists and theoreticians, and we anticipate that it will stimulate both further development of the methodology and its applications in the many interdisciplinary fieldsthat comprise modern inorganic and bioinorganic chemistry. Have the content of this Volume and the complete content of the Encyclopedia of Inorganic Chemistry at your fingertips! Visit: www.mrw.interscience.wiley.com/EIC/"--Provided by publisher.

"Over the past several decades there have been major advances in our ability to evaluate computationally the electronic structure of inorganic molecules, particularly transition metal systems. This advancement is due to the Moore's Law increase in computing power as well as the impact of density functional theory (DFT) and its implementation in commercial and freeware programs for quantum chemical calculations. Improved pure and hybrid density functionals are allowing DFT calculations with accuracy comparable to high-level Hartree-Fock treatments, and the results of these calculations can now be evaluated based on experiment. When calculations are correlated to and supported by experimental data they can provide fundamental insight into electronic structure and its contributions to physical properties and chemical reactivity. This interplay continues to expand and contributes to both improved value of experimental results and improved accuracy of computational predictions. The purpose of this EIC Book isto provide state-of-the-art presentations of quantum mechanical and related methods and their applications by many of the leaders in the field. Part One of this volume focuses on methods, their background and implementation, and their use in describing bonding properties, energies, transition states and spectroscopic features. Part Two focuses on applications in bioinorganic chemistry and Part Three discusses inorganic chemistry, where electronic structure calculations have already had a major impact. This addition to the EIC Book series is of significant value to both experimentalists and theoreticians, and we anticipate that it will stimulate both further development of the methodology and its applications in the many interdisciplinary fields that comprise modern inorganic and bioinorganic chemistry. Have the content of this Volume and the complete content of the Encyclopedia of Inorganic Chemistry at your fingertips! Visit: www.mrw.interscience.wiley.com/EIC/"--Provided by publisher.



Over the past several decades there have been major advances in our ability to evaluate computationally the electronic structure of inorganic molecules, particularly transition metal systems. This advancement is due to the Moore’s Law increase in computing power as well as the impact of density functional theory (DFT) and its implementation in commercial and freeware programs for quantum chemical calculations. Improved pure and hybrid density functionals are allowing DFT calculations with accuracy comparable to high-level Hartree-Fock treatments, and the results of these calculations can now be evaluated based on experiment.

When calculations are correlated to and supported by experimental data they can provide fundamental insight into electronic structure and its contributions to physical properties and chemical reactivity. This interplay continues to expand and contributes to both improved value of experimental results and improved accuracy of computational predictions.

The purpose of this EIC Book is to provide state-of-the-art presentations of quantum mechanical and related methods and their applications by many of the leaders in the field. Part One of this volume focuses on methods, their background and implementation, and their use in describing bonding properties, energies, transition states and spectroscopic features. Part Two focuses on applications in bioinorganic chemistry and Part Three discusses inorganic chemistry, where electronic structure calculations have already had a major impact. This addition to the EIC Book series is of significant value to both experimentalists and theoreticians, and we anticipate that it will stimulate both further development of the methodology and its applications in the many interdisciplinary fields that comprise modern inorganic and bioinorganic chemistry.

Have the content of this Volume and the complete content of the Encyclopedia of Inorganic Chemistry at your fingertips! Visit: www.mrw.interscience.wiley.com/EIC/

Recenzijas

"Computational Inorganic and Bioinorganic Chemistry is a first-rate effort." (JACS, 2010)

"This is a great work that will find its place in all libraries and laboratories.  The reader will benefit from an enormous wealth of information the application of theory to problems in bio inorganic and inorganic chemistry, and on the arsenal of methods that are now available to deal with these problems." (Angewandte Chemie, 2010)

List of Contributors
xi
Series Preface xvii
Volume Preface xix
PART 1: METHODS
1(200)
Calculation of Bonding Properties
3(14)
Gernot Frenking
Moritz von Hopffgarten
Determining Transition States in Bioinorganic Reactions
17(16)
Marcus Lundberg
Keiji Morokuma
Quantum Mechanical/Molecular Mechanical (QM/MM) Methods and Applications in Bioinorganic Chemistry
33(10)
Ulf Ryde
Ab initio and Semiempirical Methods
43(12)
Serge I. Gorelsky
Spectroscopic Properties of Protein-Bound Cofactors: Calculation by Combined Quantum Mechanical/Molecular Mechanical (QM/MM) Approaches
55(16)
Mahesh Sundararajan
Christoph Riplinger
Maylis Orio
Frank Wennmohs
Frank Neese
Spectroscopic Properties Obtained from Time-Dependent Density Functional Theory (TD-DFT)
71(20)
Jochen Autschbach
Nuclear Magnetic Resonance (NMR) Parameters of Transition Metal Complexes: Methods and Applications
91(18)
Martin Kaupp
Michael Buhl
Calculation of Reduction Potential and pKa
109(14)
Jan H. Jensen
Hui Li
Quantum-Chemistry-Centered Normal Coordinate Analysis (QCC-NCA): Application of NCA for the Simulation of the Vibrational Spectra of Large Molecules
123(18)
Nicolai Lehnert
Molecular Mechanics in Bioinorganic Chemistry
141(6)
Robert J. Deeth
Multiconfigurational Quantum Mechanics (QM) for Heavy Element Compounds
147(12)
Bjorn O. Roos
Approximate Density Functionals: Which Should I Choose?
159(14)
Dmitrij Rappoport
Nathan R. M. Crawford
Filipp Furche
Kieron Burke
Spin Contamination in Inorganic Chemistry Calculations
173(14)
Jason L. Sonnenberg
H. Bernhard Schlegel
Hrant P. Hratchian
Gaussian Basis Sets for Quantum Mechanical (QM) Calculations
187(14)
Kirk A. Peterson
PART 2: CASE STUDIES -- BIOINORGANIC
201(186)
Modeling Metalloenzymes with Density Functional and Mixed Quantum Mechanical/Molecular Mechanical (QM/MM) Calculations: Progress and Challenges
203(10)
Richard A. Friesner
Broken Symmetry States of Iron--Sulfur Clusters
213(16)
Louis Noodleman
David A. Case
Water Oxidation by the Manganese Cluster in Photosynthesis
229(12)
Per E. M. Siegbahn
Nature of the Catecholate--Fe(III) Bond: High Affinity Binding and Substrate Activation in Bioinorganic Chemistry
241(14)
Edward I. Solomon
Monita Y. M. Pau
Rosalie K. Hocking
Computational Studies: B12 Cofactors and Their Interaction with Enzyme Active Sites
255(22)
Thomas C. Brunold
Reaction Coordinate of Pyranopterin Molybdenum Enzymes
277(10)
Martin L. Kirk
Sushilla Knottenbelt
Abebe Habtegabre
Electronic Structure Calculations: Dinitrogen Reduction in Nitrogenase and Synthetic Model Systems
287(22)
Felix Tuczek
Hydrogenases: Theoretical Investigations Towards Bioinspired H2 Production and Activation
309(18)
Maurizio Bruschi
Giuseppe Zampella
Claudio Greco
Luca Bertini
Piercarlo Fantucci
Luca De Gioia
Computational Studies: Cisplatin
327(16)
Yogita Mantri
Mu-Hyun Baik
Computational Methods: Modeling of Reactivity in Zn-Containing Enzymes
343(10)
Jon I. Mujika
Adrian J. Mulholland
Jeremy N. Harvey
Combined Density Functional Theory (DFT) and Electrostatics Study of the Proton Pumping Mechanism in Cytochrome c Oxidase
353(10)
Jason Quenneville
Dragan M. Popovic
Alexei A. Stuchebrukhov
Computational Studies: Proton/Water Coupling to Metals in Biological Reaction Mechanisms
363(10)
Y. Bu
R. I. Cukier
Computational Studies: Chemical Evolution of Metal Sites
373(14)
Kasper P. Jensen
PART 3: CASE STUDIES -- INORGANIC
387(190)
Electronic Structure Calculations: Transition Metal--NO Complexes
389(22)
Abhik Ghosh
Jeanet Conradie
Kathrin H. Hopmann
Structural Origins of Noninnocent Coordination Chemistry
411(14)
Robert K. Szilagyi
Electronic Structure of Metal--Metal Bonds
425(8)
John E. McGrady
Computational Methods: Transition Metal Clusters
433(20)
Regis Gautier
Jean-Francois Halet
Jean-Yves Saillard
Computational Methods: Heteropolyoxoanions
453(14)
Josep M. Poblet
Xavier Lopez
Electronic Structure Calculations: Metal Carbonyls
467(22)
Chantal Daniel
Potential Energy Surfaces for Metal-Assisted Chemical Reactions
489(14)
Tiziana Marino
Maria del Carmen Michelini
Nino Russo
Emilia Sicilia
Marirosa Toscano
Computational Methods: Lanthanides and Actinides
503(14)
M. Dolg
X. Cao
Spin-Orbit Coupling: Effects in Heavy Element Chemistry
517(10)
Nikolas Kaltsoyannis
Noble Gas Compounds: Reliable Computational Methods
527(12)
David A. Dixon
Computational Studies: Boranes
539(12)
Oottikkal Shameema
Eluvathingal D. Jemmis
Multiple Aromaticity, Multiple Antiaromaticity, and Conflicting Aromaticity in Inorganic Systems
551(12)
Dmitry Yu. Zubarev
Alexander I. Boldyrev
Theoretical Aspects of Main Group Multiple Bonded Systems
563(14)
Ioan Silaghi-Dumitrescu
Petronela Petrar
Gabriela Nemes
R. Bruce King
Index 577
Robert A. Scott is Distinguished Research Professor of Chemistry and Biochemistry and Molecular Biology at theUniversity ofGeorgia. Trained as an inorganic chemist, he currently conducts research in the areas of biophysics, spectroscopy, and molecular cell biology. He has published more than 150 articles in the general area of biological inorganic chemistry, served as editor or co-editor of several books, and is active in professional service, organizing many meetings and symposia, most recently acting as Chair of the 2007 Metals in Biology Gordon Research Conference. He currently serves as President of the Society of Biological Inorganic Chemistry. He has served as the bioinorganic subject editor of the Encyclopedia of Inorganic Chemistry since its inception.

R. Bruce King is Regents' Professor Emeritus of Chemistry and a Professorial Fellow in the Center for Computational Chemistry at the University of Georgia.  In recent years, after a 40-year career in synthetic inorganic and organometallic chemistry and related areas of molecular catalysis, he has increasingly become involved in various computational inorganic chemistry projects in collaboration with colleagues at the University of Georgia as well as universities in Romania and China.  Dr. King has published more than 675 journal articles and edited or authored more than 20 books including more than 100 journal articles since 2000. He has won American Chemical Society Awards in Pure Chemistry (1971) and Inorganic Chemistry (1991). He has organized international conferences in the areas of inorganic chemistry, boron chemistry, mathematical chemistry, and the Periodic Table, all of which resulted in edited books. He was the American Regional Editor of the Journal of Organometallic Chemistry for 17 years (19811998) and served as Editor-in-Chief for the first two editions (1994 and 2005).

Edward I. Solomon is a Monroe E. Spaght Professor of Humanities and Sciences and SSRL Professor at Stanford University.  His research interests are in physical-inorganic, bioinorganic and theoretical-inorganic chemistry. He has published over 530 articles and edited 8 books.  Solomon is a member of the National Academy of Sciences, the American Academy of Arts and Sciences, and a Fellow of the AAAS. He has received the ACS Awards in Inorganic Chemistry, Distinguished Service in the Advancement of Inorganic Chemistry, and the Ira Remsen Award, the Centenary Medal of the Royal Society of Chemistry, the Wheland Medal from the University of Chicago, the Frontiers in Biological Chemistry Award from the MPI, Mülheim, the Chakravorty Award from the Chemical Research Society of India and the Bailar Medal from the University of Illinois. He has held numerous lectureships including the First Glen Seaborg Lecturership at UC Berkeley and has been an Invited Professor at the University of Paris, Orsay, La Plata University, Argentina, Tokyo Institute of Technology, and the TATA Institute in Bombay, India. He is an Associate Editor in Inorganic Chemistry and on 10 Editorial Advisory Boards.