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E-grāmata: Computational Systems Bioinformatics (Volume 7) - Proceedings Of The Csb 2008 Conference

Edited by (Univ Of Georgia, Usa), Edited by (In Silico Labs, Llc, Usa)
  • Formāts: 356 pages
  • Izdošanas datums: 01-Aug-2008
  • Izdevniecība: Imperial College Press
  • Valoda: eng
  • ISBN-13: 9781908978707
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  • Bibliotēkām
  • Formāts: 356 pages
  • Izdošanas datums: 01-Aug-2008
  • Izdevniecība: Imperial College Press
  • Valoda: eng
  • ISBN-13: 9781908978707
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Editors Markstein (bioinformatics, in silico Labs, LLC) and Xu (biochemistry, molecular biology and bioinformatics, U. of Georgia) have compiled the proceedings of the CSB 2008 conference held at Stanford U., giving researchers and practitioners in the fields of biology, engineering and computational science a survey into the latest advances in bioinformatics theory and applications. These 29 papers from experts in the field cover a wide range of topics such as computational genomics and genetics, structural bioinformatics, microarray data analysis, biological pathways and systems, motif identification and biomedical applications. A section is also devoted to papers on proteomics that includes the use of MSDash (mass spectrometry database and search). Distributed by World Scientific. Annotation ©2009 Book News, Inc., Portland, OR (booknews.com)

This proceedings volume contains 29 papers covering many of the latest developments in the fast-growing field of bioinformatics. The contributions span a wide range of topics, including computational genomics and genetics, protein function and computational proteomics, the transcriptome, structural bioinformatics, microarray data analysis, motif identification, biological pathways and systems, and biomedical applications. The papers not only cover theoretical aspects of bioinformatics but also delve into the application of new methods, with input from computation, engineering and biology disciplines. This multidisciplinary approach to bioinformatics gives these proceedings a unique viewpoint of the field.
Preface v
Committees vii
Referees ix
Genomics
An ORFome Assembly Approach to Metagenomics Sequences Analysis
3(12)
Yuzhen Ye
Haixu Tang
A Probabilistic Coding Based Quantum Genetic Algorithm for Multiple Sequence Alignment
15(12)
Hongwei Huo
Qiaoluan Xie
Xubang Shen
Vojislav Stojkovic
Scalable Computation of Kinship and Identity Coefficients on Large Pedigrees
27(10)
En Cheng
Brendan Elliott
Z. Meral Ozsoyoglu
Voting Algorithms for the Motif Finding Problem
37(14)
Xiaowen Liu
Bin Ma
Lusheng Wang
Proteomics
A Max-Flow Based Approach to the Identification of Protein Complexes Using Protein Interaction and Microarray Data
51(12)
Jianxing Feng
Rui Jiang
Tao Jiang
MSDash: Mass Spectrometry Database and Search
63(10)
Zhan Wu
Gilles Lajoie
Bin Ma
Estimating Support for Protein-Protein Interaction Data with Applications to Function Predication
73(12)
Erliang Zeng
Chris Ding
Giri Narasimhan
Stephen R. Holbrook
GaborLocal: Peak Detection in Mass Spectrum by Gabor Filters and Gaussian Local Maxima
85(14)
Nha Nguyen
Heng Huang
Soontorn Oraintara
An Vo
Structural Bioinformatics
Optimizing Bayes Error for Protein Structure Model Selection by Stability Mutagenesis
99(10)
Xiaoduan Ye
Alan M. Friedman
Chris Bailey-Kellogg
Feedback Algorithm and Web-Server for Protein Structure Alignment
109(12)
Zhiyu Zhao
Bin Fu
Francisco J. Alanis
Christopher M. Summa
Predicting Flexible Length Linear B-Cell Epitopes
121(12)
Yasser EL-Manzalawy
Drena Dobbs
Vasant Honavar
Fast and Accurate Multi-class Protein Fold Recognition with Spatial Sample Kernels
133(12)
Pavel Kuksa
Pai-Hsi Huang
Vladimir Pavlovic
Designing Secondary Structure Profiles for Fast ncRNA Identification
145(12)
Yanni Sun
Jeremy Buhler
Matching of Structurral Motifs Using Hashing on Residue Labels and Geometric Filtering for Protein Function Prediction
157(12)
Mark Moll
Lydia E. Kavraki
A Hausdorff-based NOE Assignment Algorithm Using Protein Backbone Determined from Residual Dipolar Couplings and Rotamer Patterns
169(14)
Jianyang (Michael) Zeng
Chittaranjan Tripathy
Pei Zhou
Bruce R. Donald
Iterative Non-sequential Protein Structural Alignment
183(12)
Saeed Salem
Mohammed J. Zaki
Combining Sequence and Structural Profiles for Protein Solvent Accessibility Prediction
195(8)
Rajkumar Bondugula
Dong Xu
Extensive Exploration of Conformational Space Improves Rosetta Results for Short Protein Domains
203(8)
Yaohang Li
Andrew J. Bordner
Yuan Tian
Xiuping Tao
Andrey A. Gorin
Improving Homology Models for Protein-Ligand Binding Sites
211(14)
Chris Kauffman
Huzefa Rangwala
George Karypis
Pathways, Networks, and Biological Systems
Using Relative Importance Methods to Model High-Throughput Gene Perturbation Screens
225(12)
Ying Jin
Naren Ramakrishnan
Lenwood S. Heath
Richard F. Helm
Consistent Alignment of Metabolic Pathways Without Abstraction
237(12)
Ferhat Ay. Tamer Kahveci
Valerie de Crecy-Lagard
Detecting Pathways Transcriptionally Correlated with Clinical Parameters
249(12)
Igor Ulitsky
Ron Shamir
Computational Genomics
The Effect of Massive Gene Loss Following Whole Genome Duplication on the Algorithmic Reconstruction of the Ancestral Populus Diploid
261(12)
Chunfang Zheng
P. Kerr Wall
Jim Leebens-Mack
Victor A. Albert
Claude dePamphilis
David Sankoff
Error Tolerant Sibship Reconstruction in Wild Populations
273(12)
Saad I. Sheikh
Tanya Y. Berger-Wolf
Mary V. Ashley
Isabel C. Caballero
Wanpracha Chaovalitwongse
Bhaskar DasGupta
On the Accurate Construction of Consensus Genetic Maps
285(12)
Yonghui Wu
Timothy J. Close
Stefano Lonardi
Efficient Haplotype Inference from Pedigrees with Missing Data Using Linear Systems with Disjoint-Set Data Structures
297(14)
Xin Li
Jing Li
Computational Methods
Knowledge Representation and Data Mining for Biological Imaging
311(4)
Wamiq M. Ahmed
Fast Multisegment Alignments for Temporal Expression Profiles
315(12)
Adam A. Smith
Mark Craven
Graph Wavelet Alignment Kernels for Drug Virtual Screening
327(12)
Aaron Smalter
Jun Huan
Gerald Lushington
Author Index 339