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1 Fungi: Characteristics and Classification |
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1 | (14) |
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1.1 Basic Characteristics of Fungi |
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2 | (4) |
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1.2 A Broad Classification of Fungi |
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6 | (9) |
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6 | (4) |
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1.2.2 Kingdom Straminipila |
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10 | (5) |
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2 The Marine Environment and the Role of Fungi |
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15 | (22) |
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2.1 Divisions of the Marine Environment |
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16 | (2) |
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18 | (1) |
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2.2.1 Primary Production in Marine Ecosystems |
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19 | (1) |
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2.3 The Major Marine Ecosystems |
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19 | (5) |
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2.3.1 Coastal Environments |
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19 | (3) |
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2.3.2 Offshore Pelagic, Benthic, and Deep-sea Habitats |
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22 | (2) |
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2.4 Fungi in Marine Ecosystem Processes |
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24 | (7) |
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24 | (1) |
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25 | (6) |
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2.5 Diversity of Marine Fungi |
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31 | (6) |
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32 | (2) |
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2.5.2 Kingdom Straminipila |
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34 | (3) |
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3 History of Marine Mycology |
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37 | (6) |
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4 Allochthonous Wood in Coastal Waters |
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43 | (16) |
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4.1 Diversity of Fungi on Allochthonous Wood in the Sea |
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45 | (4) |
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4.2 Growth and Degradative Activities of Marine Lignicolous Fungi |
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49 | (10) |
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4.2.1 Colonization and Growth |
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49 | (3) |
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4.2.2 Enzymatic Degradation of Wood |
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52 | (2) |
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4.2.3 Relationship of Lignicolous Fungi with Wood Borers and Bacteria |
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54 | (5) |
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59 | (26) |
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5.1 Fungi in Woody Detritus of Mangroves |
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61 | (12) |
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5.1.1 Diversity of Fungi in Decomposing Mangrove Wood |
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62 | (9) |
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5.1.2 Enzymatic Degradation of Lignocellulosic Material by Mangrove Fungi |
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71 | (2) |
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5.2 Fungi in Detritus of Mangrove Leaves and Seedlings |
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73 | (9) |
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5.2.1 Fungi and Decompositional Phases |
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73 | (9) |
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5.3 Fungi in Mangrove Sediments and Waters |
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82 | (3) |
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6 The Salt Marsh Ecosystem |
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85 | (16) |
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6.1 Fungi in Decomposing Salt Marsh Grass |
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87 | (14) |
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6.1.1 Diversity of Fungi in Decomposing Salt Marsh Grass |
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87 | (3) |
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6.1.2 Fungal Succession and Dynamics in Decomposing Salt Marsh Grass |
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90 | (11) |
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101 | (10) |
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7.1 Symbiotic Fungi in Living Seagrasses |
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102 | (4) |
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102 | (2) |
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7.1.2 Fungal Diseases of Seagrass |
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104 | (2) |
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7.2 Saprotrophic Fungi in Seagrass Detritus |
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106 | (2) |
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7.3 Fungi in Sediments of Seagrass Vegetation |
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108 | (1) |
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7.4 Fungi as Food for Seagrass Detritivores |
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108 | (3) |
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8 The Macroalgal Ecosystem |
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111 | (24) |
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8.1 Symbiotic Fungi in Macroalgae |
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113 | (15) |
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8.1.1 Endophytic Fungi in Marine Algae |
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113 | (2) |
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8.1.2 Mutualistic Associations Between Fungi and Algae |
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115 | (3) |
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8.1.3 Parasites of Macroalgae |
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118 | (10) |
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8.2 Saprobic Fungi in Marine Algae |
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128 | (7) |
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8.2.1 Diversity of Fungi in Macroalgal Detritus |
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128 | (1) |
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8.2.2 Dynamics of Fungi in Macroalgal Detritus |
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129 | (6) |
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9 The Coral Reef Ecosystem |
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135 | (18) |
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9.1 Fungi in Scleractinian Corals |
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136 | (8) |
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9.1.1 Diversity of Fungi in Scleractinian Corals |
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137 | (2) |
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9.1.2 Endolithic Mycelial Fungi in Corals and Bioerosion |
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139 | (2) |
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9.1.3 Symbiotic Relationships Between Endolithic Fungi and Corals |
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141 | (3) |
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144 | (3) |
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9.2.1 The "Sea Fan Disease" or "Aspergillosis" of Gorgonian Soft Corals |
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144 | (3) |
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9.3 Sponge-Associated Fungi |
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147 | (4) |
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9.3.1 Diversity of Sponge-Associated Fungi |
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148 | (2) |
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9.3.2 The Symbiotic Association of Fungi with Sponges |
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150 | (1) |
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9.4 Fungi in Diverse Coral Reef Invertebrates and Algae |
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151 | (2) |
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10 Animals in Coastal Benthic Ecosystem and Aquaculture Systems |
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153 | (20) |
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10.1 Nonpathogenic Symbiotic Fungi in Animals |
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153 | (2) |
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10.2 Animal Diseases Caused by Fungi |
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155 | (12) |
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10.2.1 Fungi that Cause Animal Diseases |
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156 | (3) |
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10.2.2 Infections of Shrimps and Prawns |
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159 | (2) |
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10.2.3 Infection of Crabs and Lobsters |
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161 | (2) |
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10.2.4 Bivalves and Gastropods |
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163 | (3) |
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166 | (1) |
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166 | (1) |
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10.3 Saprobic Fungi in Marine Animals |
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167 | (6) |
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173 | (34) |
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11.1 Fungi in Pelagic Phytoplankton and Animals |
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176 | (8) |
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11.1.1 Fungi Associated with Phytoplankton |
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176 | (6) |
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11.1.2 Fungi in Mesozooplankton, Fish, and Mammals |
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182 | (2) |
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11.2 Fungi in the Water Column |
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184 | (18) |
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11.2.1 Diversity of Fungi in the Water Column |
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185 | (4) |
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11.2.2 Abundance and Biomass of Fungi in the Water Column |
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189 | (13) |
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11.3 Fungi in Coastal Sediments |
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202 | (5) |
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12 Extreme Marine Environments |
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207 | (44) |
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208 | (16) |
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12.1.1 Deep-Sea Waters and Sediments |
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210 | (10) |
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12.1.2 The Deep Biosphere |
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220 | (4) |
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224 | (5) |
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12.2.1 Presence and Diversity of Fungi in Hydrothermal Vents |
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226 | (2) |
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12.2.2 Fungi in Hydrothermal Vent Animals |
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228 | (1) |
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12.3 Hypoxic and Anoxic Habitats |
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229 | (7) |
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12.3.1 Diversity of Fungi in Hypoxic and Anoxic Marine Environments |
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231 | (2) |
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12.3.2 Activity of Fungi in Anoxic Environments |
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233 | (3) |
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236 | (4) |
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12.4.1 Fungi in Diverse Polar Habitats |
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237 | (3) |
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12.5 Hypersaline Environments |
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240 | (11) |
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12.5.1 Diversity of Fungi in Hypersaline Environments |
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242 | (3) |
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12.5.2 Ecology of Fungi in Hypersaline Environments |
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245 | (2) |
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12.5.3 Physiological Adaptations |
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247 | (4) |
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13 Physiology, Biochemistry, and Biotechnology |
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251 | (42) |
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252 | (6) |
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252 | (4) |
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256 | (1) |
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257 | (1) |
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13.1.4 Carbon and Nitrogen Nutrition |
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258 | (1) |
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13.2 Enzymes and Cellular Proteins |
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258 | (12) |
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13.2.1 Enzymes and Proteins Tolerant to Extreme Conditions |
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258 | (3) |
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13.2.2 Lignocellulolytic Enzymes |
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261 | (8) |
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13.2.3 Enzymes that Degrade Marine Polymers |
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269 | (1) |
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270 | (3) |
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13.4 Hydrocarbon Degradation |
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273 | (1) |
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13.5 Secondary Metabolites and Bioactive Compounds |
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274 | (10) |
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13.6 Omega-3 Fatty Acids, High Value Lipids, and Carotenoids from Thraustochytrids |
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284 | (5) |
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289 | (4) |
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14 Origin and Evolution of Marine Fungi |
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293 | (16) |
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14.1 Evolution of Marine Mycetaen Fungi |
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293 | (9) |
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14.1.1 Evolution of Obligate Marine Mycetaen Fungi |
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297 | (5) |
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14.2 Evolution of Marine Straminipilan Fungi |
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302 | (7) |
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15 Methods to Study Marine Fungi |
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309 | (22) |
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15.1 Culturing of Marine Fungi |
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310 | (7) |
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15.1.1 Direct Detection and Culturing |
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310 | (3) |
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313 | (2) |
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15.1.3 Baiting and Culturing |
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315 | (2) |
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15.2 Taxonomic Identification and Diversity Studies of Marine Fungi |
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317 | (5) |
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15.2.1 Identification Based on Morphology |
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317 | (1) |
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15.2.2 Molecular Methods for Identification and Metagenomics |
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318 | (4) |
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15.3 Detection of Fungi and Biomass Estimations |
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322 | (5) |
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15.3.1 Detection and Estimation of Filamentous Fungi |
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322 | (4) |
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15.3.2 Detection and Estimation of Labyrinthulomycetes |
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326 | (1) |
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15.4 Culturing Deep-Sea Fungi |
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327 | (1) |
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328 | (3) |
Abbreviations |
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331 | (2) |
References |
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333 | |