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German Medical Data Sciences: Bringing Data to Life: Proceedings of the Joint Annual Meeting of the German Association of Medical Informatics, Biometry and Epidemiology (gmds e.V.) and the Central European Network - International Biometric Society (CEN-IBS) 2020 in Berlin, Germany [Mīkstie vāki]

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The COVID-19 pandemic has brought into sharp focus the need for the collection of data. Such data cannot be collected or provided without medical informatics, documentation and health data management. Nor can health data be evaluated and converted into a useful tool for making the important decisions that affect us all without biometrics and epidemiology, bioinformatics and systems biology. This book presents full papers from GMDS & CEN-IBS 2020, the first joint online conference of the German Association of Medical Informatics, Biometry and Epidemiology (GMDS) and the Central European Network & the International Biometric Society (CEN-IBS), held online between 6 and 11 September 2020. The title of the conference was Bringing Data to Life, a reference to the increasing amount of data in medical research which is inextricably related to the fast-developing digitalization of the health system. Many challenges must be addressed in order to make use of and benefit from these increasing sources of data, and these can only be faced if all disciplines related to data science work together. The conference aimed to bring together the diverse disciplines within data science, including medical informatics, bioinformatics, biostatistics, epidemiology, public health and medical documentation. Topics covered in the book include central themes relevant to society in general and advances in data technology which support innovations in medical research in particular. The book brings together many topics related to the provision and analysis of data in medicine, and will be of interest to all those working in the field.
Bringing Data to Life v
Geraldine Rauch
The First Online-Conference! vii
Alfred Winter
Reviewers for GMDS & CEN 2020 ix
Bioinformatics & System Biology
A Specialized System for Arrhythmia Detection for Basic Research in Cardiology
3(8)
Michael Kohlhaas
Lea Seidlmayer
Mathias Kaspar
Biostatistics
Choosing Interim Sample Sizes in Group Sequential Designs
11(8)
Sergey Tarima
Nancy Flournoy
Medical Documentation
Postcoordination of LOINC Codes in SNOMED CT
19(10)
Nina Haffer
Sylvia Thun
Medical Informatics
Patient Empowerment Through Digital Voice Pens: A Feasibility Study
29(6)
Tobias J. Brix
Jonas Hoffacker
Philipp Neuhaus
Martin Dugas
Michael Storck
ODM Clinical Data Generator: Syntactically Correct Clinical Data Based on Metadata Definition
35(6)
Tobias J. Brix
Ludger Becker
Timm Harbich
Johannes Oehm
Maximilian Fechner
Martin Dugas
Michael Storck
The Registry Data Warehouse in the European Reference Network for Rare
Respiratory Diseases - Background, Conception and Implementation
41(8)
Jannik Schaaf
James Chalmers
Heymut Omran
Petra Pennekamp
Olivier Sitbon
Thomas O.F. Wagner
Abilio Reis
Dennis Kadioglu
Holger Storf
Visualization of Similar Patients in a Clinical Decision Support System for Rare
Diseases -- A Focus Group Study
49(9)
Jannik Schaaf
Martin Sedlmayr
Hans-Ulrich Prokosch
Niels Tegtbauer
Dennis Kadioglu
Johanna Schaefer
Martin Boeker
Holger Storf
Generating Enriched Synthetic German Hospital Claims Data -- A Use Case Driven Approach
58(8)
Sven Heifer
Michele Kumrnel
Franziska Bathelt
Martin Sedlmayr
Ontological Modelling and Execution of Phenotypic Queries in the Leipzig Health Atlas
66(9)
Alexandr Uciteli
Christoph Beger
Jonas Wagner
Alexander Kiel
Frank A. Meineke
Sebastian Stdubert
Matthias Lobe
Rene Hansel
Judith Schuster
Toralf Kirsten
Heinrich Herre
HIStream-Import: A Generic ETL Framework for Processing Arbitrary Patient Data Collections or Hospital Information Systems into HL7 FHIR Bundles
75(5)
Raphael W. Majeed
Mark R. Stohr
Andreas Glinther
Fit for Purpose: Analyzing the German Archiving and Exchange Interface for Medical Practice Management Systems
80(6)
Linus Barkow
Oliver Meineke
Hannes Ulrich
Josef Ingenerf
openEHR Mapper A Tool to Fuse Clinical and Genomic Data Using the openEHR Standard
86(8)
Niklas Reimer
Hannes Ulrich
Hauke Busch
Ann-Kristin Kock-Schoppenhauer
Josef Ingenerf
ISO 21526 Conform Metadata Editor for FAIR Unicode SKOS Thesauri
94(7)
Mark R. Stohr
Andreas Gunther
Raphael W. Majeed
Record Linkage in Clinical Cancer Registration: Experiences and Findings from Lower Saxony
101(9)
Kira Scheel
Thomas Franke
Alisha Weikert
Melanie Dick
Anna Walter
Jan Zeidler
Tobias Hartz
Quality of Life as an Indicator for Care Delivery in Clinical Oncology Using FHIR
110(8)
Chantal N.L. Beutter
Jan Ross
Patrick Werner
Dilyana Vladimirova
Uwe M. Martens
Christian Fegeler
Semantic Anomaly Detection in Medical Time Series
118(8)
Sven Festag
Cord Spreckelsen
Executing Distributed Healthcare and Research Processes -- The HiGHmed Data Sharing Framework
126(8)
Hauke Hund
Reto Wettstein
Christian M. Heidt
Christian Fegeler
Feasibility Queries in Distributed Architectures Concept and Implementation in HiGHmed
134(8)
Reto Wettstein
Hauke Hund
Insa Kobylinski
Christian Fegeler
Oliver Heinze
A Federated Record Linkage Algorithm for Secure Medical Data Sharing
142(8)
Christian M. Heidt
Hauke Hund
Christian Fegeler
Merging Genomics Public Datasets with Clinical Cancer Registry Data -- Lessons Learned
150(6)
Lorena Schall
Sylvia Bochum
Monika Pobiruchin
Use of LOINC and SNOMED CT with FHIR for Microbiology Data
156(7)
Eugenia Rinaldi
Julian Saas
Sylvia Thun
The Process of Modeling Information System Architectures with IHE
163(8)
Angela Merzweiler
Sebastian Staubert
Alexander Strubing
Armel Tonmbiak
Knut Kaulke
Johannes Drepper
Bjorn Bergh
Alfred Winter
Concept and Implementation of Data Usage Proposal Process Based on
International Standards in SMITH
171(9)
Marcel Klotgen
Eric Fiege
Salima Houta
IU -- A Digital Application for the Graphical Examination of Interpersonal Attachment
180(7)
Sebastian Unger
Cony Theis
Christina Niedermann
Thomas Ostermann
Preliminary Analysis of Structured Reporting in the HiGHmed Use Case Cardiology: Challenges and Measures
187(8)
Aljoscha Kindermann
Erik Tute
Sebastian Benda
Martin Lopprich
Phillip Richter-Pechanski
Christoph Dieterich
Mobile Health Applications for Rehabilitation of Musculoskeletal Diseases of the Shoulder: A Systematic Analysis
195(8)
Bianca Steiner
Isabel Richter
Lena Elgert
Reinhold Haux
Klaus-Hendrik Wolf
Oncology on FHIR: A Data Model for Distributed Cancer Research
203(8)
Mohamed Lambarki
Jori Kern
David Croft
Cdcilia Engels
Noemi Deppenwiese
Alexander Kerscher
Alexander Kiel
Stefan Palm
Martin Lablans
Digitizing Data Management for Intraoperative Neuromonitoring
211(6)
Chantal Zbinden
Moritz Strickler
Murat Sariyar
Thomas Burkle
Kathleen Seidel
A Multi-User Terminology Mapping Toolbox
217(7)
Sebastian Mate
Susanne A. Seuchter
Katharina Ehrenberg
Noemi Deppenwiese
Jakob Zierk
Hans-Ulrich Prokosch
Detlef Kraska
Lorenz A. Kapsner
First Steps to Evaluate an NLP Tool's Medication Extraction Accuracy from Discharge Letters
224(7)
Deniz Caliskan
Jakob Zierk
Detlef Kraska
Stefan Schulz
Philipp Daumke
Hans-Ulrich Prokosch
Lorenz A. Kapsner
Fast Healthcare Interoperability Resources (FHIR®) Representation of Medication Data Derived from German Procedure Classification Codes (OPS) Using Identification of Medicinal Products (IDMP) Compliant Terminology
231(6)
Julian Sass
Susanne Zabka
Andrea Essenwanger
Josef Schepers
Martin Boeker
Sylvia Thun
Needs for an Integration of Specific Data Sources and Items First Insights of a National Survey Within the German Center for Infection Research
237(8)
Carolin E.M. Jakob
Melanie Stecher
Sandra Fuhrmann
Sebastian Wingen-Heimann
Stephanie Heinen
Gabriele Anton
Michael Behnke
Ufa Behrends
Martin Boeker
Stefanie Castell
Hans Demski
Maximilian Diefenbach
Jane C. Falgenhauer
Moritz Fritzenwanker
Petra Gastmeier
Markus Gerhard
Stephan Glockner
Mira Golubovic
Barbara Gunsenheimer Bartmeyer
Josef Ingenerf
Rolf Kaiser
Marie-Luise Korner
Wibke Loag
Alice Mchardy
Ernst Molitor
Ulrich Niibel
Michael Pritsch
Michael Ramharter
Sigbert R. Rieg
Jan Rupp
Daniela Schindler
Dominik Schwudke
Christoph Spinner
Benjamin Stottmeier
Maria Vehreschild
Matthias Willmann
Jorg J. Vehreschild
Accessing the ECG Data of the Apple Watch and Accomplishing Interoperability Through FHIR
245(6)
Alexander Bartschke
Yannick Borner
Sylvia Thun
Accessing OMOP Common Data Model Repositories with the i2b2 Webclient -- Algorithm for Automatic Query Translation
251(10)
Raphael W. Majeed
Patrick Fischer
Andreas Gunther
Subject Index 261(2)
Author Index 263