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Mathematics of DNA Structure, Function and Interactions 2009 ed. [Hardback]

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  • Formāts: Hardback, 356 pages, height x width: 235x155 mm, weight: 784 g, 70 Illustrations, color; XII, 356 p. 70 illus. in color., 1 Hardback
  • Sērija : The IMA Volumes in Mathematics and its Applications 150
  • Izdošanas datums: 22-Sep-2009
  • Izdevniecība: Springer-Verlag New York Inc.
  • ISBN-10: 144190669X
  • ISBN-13: 9781441906694
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  • Formāts: Hardback, 356 pages, height x width: 235x155 mm, weight: 784 g, 70 Illustrations, color; XII, 356 p. 70 illus. in color., 1 Hardback
  • Sērija : The IMA Volumes in Mathematics and its Applications 150
  • Izdošanas datums: 22-Sep-2009
  • Izdevniecība: Springer-Verlag New York Inc.
  • ISBN-10: 144190669X
  • ISBN-13: 9781441906694
Citas grāmatas par šo tēmu:
Propelled by the success of the sequencing of the human and many related genomes, molecular and cellular biology has delivered significant scientific breakthroughs. Mathematics (broadly defined) continues to play a major role in this effort, helping to discover the secrets of life by working collaboratively with bench biologists, chemists and physicists.



Because of its outstanding record of interdisciplinary research and training, the IMA was an ideal venue for the 2007-2008 IMA thematic year on Mathematics of Molecular and Cellular Biology. The kickoff event for this thematic year was a tutorial on Mathematics of Nucleic Acids, followed by the workshop Mathematics of Molecular and Cellular Biology, held September 15--21 at the IMA. This volume is dedicated to the memory of Nicholas R. Cozzarelli, a dynamic leader who fostered research and training at the interface between mathematics and molecular biology. It contains a personal remembrance of Nick Cozzarelli, plus 15 papers contributed by workshop speakers. The papers give an overview of state-of-the-art mathematical approaches to the understanding of DNA structure and function, and the interaction of DNA with proteins that mediate vital life processes.
Foreword v
Preface vii
Nick Cozzarelli: A personal remembrance
1(6)
Stephen D. Levene
Lynn Zechiedrich
Mathematical methods in DNA topology: Applications to chromosome organization and site-specific recombination
7(30)
Javier Arsuaga
Yuanan Diao
Mariel Vazquez
Conformational statistics of DNA and diffusion equations on the Euclidean group
37(16)
Gregory S. Chirikjian
Perspectives on DNA looping
53(20)
Laura Finzi
Differences between positively and negatively supercoiled DNA that topoisomerases may distinguish
73(50)
Jonathan M. Fogg
Daniel J. Catanese, Jr.
Graham L. Randall
Michelle C. Swick
Lynn Zechiedrich
Calibration of tethered particle motion experiments
123(16)
Lin Han
Bertrand H. Lui
Seth Blumberg
John F. Beausang
Philip C. Nelson
Rob Phillips
Difference topology: Analysis of high-order DNA-protein assemblies
139(20)
Makkuni Jayaram
Rasika Harshey
Useful intrusions of DNA topology into experiments on protein-DNA geometry
159(18)
Jason D. Kahn
James R. Jenssen
Vasavi Vittal
Topological analysis of DNA-protein complexes
177(18)
Soojeong Kim
Isabel K. Darcy
Closing the loop on protein-DNA interactions: Interplay between shape and flexibility in nucleoprotein assemblies having implications for biological regulation
195(18)
Stephen D. Levene
Yongli Zhang
Four-way helical junctions in DNA molecules
213(12)
David M.J. Lilley
Micromechanics of single supercoiled DNA molecules
225(26)
John F. Marko
Flexibility of nucleosomes on topologically constrained DNA
251(42)
Andrei Sivolob
Christophe Lavelle
Ariel Prunell
The mathematics of DNA structure, mechanics, and dynamics
293(28)
David Swigon
Paradox regained: a topological coupling of nucleosomal DNA wrapping and chromatin fibre coiling
321(10)
Andrew Travers
Statistical-mechanical analysis of enzymatic topological transformations in DNA molecules
331(16)
Alexander Vologodskii
List of workshop participants 347