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E-grāmata: Methodologies for Metabolomics: Experimental Strategies and Techniques

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  • Izdošanas datums: 21-Jan-2013
  • Izdevniecība: Cambridge University Press
  • Valoda: eng
  • ISBN-13: 9781139609753
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  • Formāts: EPUB+DRM
  • Izdošanas datums: 21-Jan-2013
  • Izdevniecība: Cambridge University Press
  • Valoda: eng
  • ISBN-13: 9781139609753
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"While most of the focus in "omics" science over the past decade has been on sequencing the human genome [ 1] or annotating the human proteome [ 2], there is another equally important component of the human body that has, until recently, been largely overlooked: the human metabolome. The human metabolome can be thought of as the complete collection of small molecule metabolites found in our bodies. These small molecules include such chemical entities as peptides, amino acids, nucleic acids, carbohydrates, organic acids, vitamins, minerals, food additives, drugs and just about any other chemical (with a molecular weight 1500 Da) that can be used, ingested or synthesized by humans. Metabolites act as the bricks and mortar of our cells. They serve as the building blocks for all of our macromolecules including proteins, RNA, DNA, carbohydrates, membranes and all other biopolymers that give our cells their structure and integrity. Metabolites also act as the fuel for all cellular processes, the buffers to help tolerate environmental insults and the messengers for most intra- and intercellular events. Together with the genome and the proteome, the human metabolome essentially defines who and what we are."--

Papildus informācija

Methodologies for Metabolomics provides comprehensive descriptions of the newest methodological strategies and techniques in metabolomic research.
Contributors viii
SECTION 1 BASIC METHODOLOGICAL STRATEGIES IN METABOLOMIC RESEARCH
1 Exploring the Human Metabolome by Nuclear Magnetic Resonance Spectroscopy and Mass Spectrometry
3(27)
David S. Wishart
2 Methodological Requirements for Lipidomics Research
30(24)
Kui Yang
Michael A. Kiebish
Richard W. Gross
3 Biological Methods for Metabolic Research
54(25)
Arancha Cebrian
Laura Menchen
Elsa Sanchez-Lopez
Juan Casado-Vela
Santiago Diaz-Moralli
Marta Cascante
Teresa Gomez del Pulgar
Juan Carlos Lacal
SECTION 2 METABOLOMIC MASS SPECTROMETRY: EXPERIMENTAL TECHNIQUES AND BIOINFORMATICS
4 Considerations in Sample Preparation, Collection, and Extraction Approaches Applied in Microbial, Plant, and Mammalian Metabolic Profiling
79(40)
J. William Allwood
Catherine L. Winder
Warwick B. Dunn
Royston Goodacre
5 Mass Spectrometry-Based Methodologies for Single-Cell Metabolite Detection and Identification
119(21)
Ann M. Knolhoff
Peter Nemes
Stanislav S. Rubakhin
Jonathan V. Sweedler
6 Direct Metabolomics from Tissues and Cells: Laser Ablation Electrospray Ionization for Small Molecule and Lipid Characterization
140(19)
Akos Vertes
Bindesh Shrestha
Peter Nemes
7 Bioinformatic Approaches to Processing and Annotation of High-Resolution Mass Spectrometry Data
159(15)
Ralf J. M. Weber
Mark R. Viant
8 Approaches for Natural Product Detection and Structural Elucidation Using Mass Spectrometry with High Mass Accuracy
174(11)
Ioanna Ntai
Neil L. Kelleher
9 Metabolomics Using Ion Mobility Mass Spectrometry
185(20)
Kimberly A. Kaplan
Herbert H. Hill, Jr.
10 Metabolomics via Biomedical Mass Spectrometry: From Sampling to Clinical Applications
205(22)
Bong Chul Chung
Man Ho Choi
SECTION 3 METABOLOMICS OF BIOFLUIDS: NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY AND CHEMOMETRICS
11 Analytical Techniques in Metabolomics Integrating Nuclear Magnetic Resonance Spectroscopy and Chromatography with Mass Spectrometry
227(17)
Ulrich Braumann
Markus Godejohann
12 Chemometric Methods in Nuclear Magnetic Resonance-Based Body Fluid Analysis
244(13)
Ron Wehrens
Udo Engelke
13 Nuclear Magnetic Resonance of Cerebrospinal Fluid: The Neurometabolome
257(14)
Fanny Mochel
14 Nuclear Magnetic Resonance-Based Saliva Metabolomics
271(10)
Hanne Christine Bertram
Morten Rahr Clausen
15 Nuclear Magnetic Resonance Methods for Metabolomic Investigation of Amniotic Fluid
281(18)
Ana M. Gil
Goncalo Graca
16 Nuclear Magnetic Resonance Analysis and Genetic Metabolic Disease
299(18)
Udo Engelke
Angelina Goudswaard
Eva Morava
Ron A. Wevers
17 Lipid Profiling in Health and Disease
317(18)
Christina E. Kostara
Eleni T. Bairaktari
SECTION 4 METABOLOMIC NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY TECHNIQUES FOR BODY TISSUE ANALYSIS
18 Magnetic Resonance Spectroscopy in Investigating the Cancer Metabolome in Preclinical Model Systems
335(42)
Marie-France Penet
Zaver M. Bhujwalla
Kristine Glunde
19 Phospholipidomics by Phosphorus Nuclear Magnetic Resonance Spectroscopy of Tissue Extracts
377(38)
Norbert W. Lutz
Patrick J. Cozzone
20 Carbon-13 Nuclear Magnetic Resonance for Analysis of Metabolic Pathways
415(31)
Craig R. Malloy
Elizabeth Maher
Isaac Marin-Valencia
Bruce Mickey
Ralph J. DeBerardinis
A. Dean Sherry
21 Hyperpolarized Nuclear Magnetic Resonance Spectroscopy: A New Method for Metabolomic Research
446(26)
Ralph E. Hurd
Yi-Fen Yen
Albert Chen
22 Metabolomic Magnetic Resonance Spectroscopy of Human Tissues: Comparison of In Vivo and High-Resolution Magic Angle Spinning Ex Vivo Techniques
472(24)
Geoffrey S. Payne
Yuen-Li Chung
Martin O. Leach
23 Reproducible Sample Preparation and Spectrum Acquisition Techniques for Metabolic Profiling of Human Tissues by Proton High-Resolution Magic Angle Spinning Nuclear Magnetic Resonance
496(29)
Martial Piotto
Francois-Marie Moussallieh
Alessio Imperiale
Malika A. Benahmed
Julien Detour
Jean-Pierre Bellocq
Izzie J. Namer
Karim Elbayed
24 Assignment Strategies for Nuclear Magnetic Resonances in Metabolomic Research
525(60)
Teresa W.-M. Fan
Andrew N. Lane
Index 585
Norbert W. Lutz is Research Professor at the School of Medicine at the University of Aix-Marseille, France. He has previously held positions at the Johns Hopkins University School of Medicine, the German Cancer Research Center, the University of Arizona Cancer Center and other internationally renowned research institutions. His research is primarily focused on the analysis of metabolic processes in cancer and in neurological diseases. His papers have appeared in Analytical Chemistry, Annals of Neurology, PLoS ONE, International Journal of Cancer, AIDS, Metabolomics, NMR in Biomedicine and other journals. Jonathan V. Sweedler is the James R. Eiszner Family Professor of Chemistry and the Director of the School of Chemical Sciences at the University of Illinois at Urbana-Champaign, USA. His major research efforts involve developing new approaches for small-volume peptidomics and metabolomics and the application of these technologies to study novel neuro-chemical pathways. Professor Sweedler has published more than 350 manuscripts, book chapters and reviews and has presented 350 invited lectures relate to research in these areas. He is Editor-in-Chief of Analytical Chemistry. Ron Wevers is head of the laboratory of Genetic Endocrine and Metabolic Diseases of the Radboud University Nijmegen Medical Centre in the Netherlands. He has a chair in Clinical Chemistry of Inborn Errors of Metabolism. Professor Wevers is also a member of the Dutch Health Council. He has co-authored more than 300 peer-reviewed papers and many book chapters and wrote a handbook on body fluid NMR spectroscopy in patients with inborn errors of metabolism.