Preface |
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Contributors |
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xi | |
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Part I Saliva and Other Oral Fluids |
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1 Salivary Diagnostics Using Purified Nucleic Acids |
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3 | (14) |
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2 RNA Sequencing Analysis of Salivary Extracellular RNA |
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17 | (20) |
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3 Qualitative and Quantitative Proteome Analysis of Oral Fluids in Health and Periodontal Disease by Mass Spectrometry |
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37 | (24) |
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4 Antioxidant Micronutrients and Oxidative Stress Biomarkers |
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61 | (18) |
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5 NMR-Based Metabolomics of Oral Biofluids |
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79 | (28) |
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6 Gene Therapy of Salivary Diseases |
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107 | (20) |
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Part II Molecular Biosciences |
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7 The Oral Microbiota in Health and Disease: An Overview of Molecular Findings |
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127 | (12) |
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8 Microbial Community Profiling Using Terminal Restriction Fragment Length Polymorphism (T-RFLP) and Denaturing Gradient Gel Electrophoresis (DGGE) |
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139 | (14) |
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9 Analysis of 16S rRNA Gene Amplicon Sequences Using the QIIME Software Package |
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153 | (12) |
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10 Adhesion of Yeast and Bacteria to Oral Surfaces |
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165 | (26) |
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11 Quantitative Analysis of Periodontal Pathogens Using Real-Time Polymerase Chain Reaction (PCR) |
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191 | (12) |
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12 Methods to Study Antagonistic Activities Among Oral Bacteria |
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203 | (16) |
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13 Natural Transformation of Oral Streptococci by Use of Synthetic Pheromones |
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219 | (14) |
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14 Markerless Genome Editing in Competent Streptococci |
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233 | (16) |
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15 Tools and Strategies for Analysis of Genome-Wide and Gene-Specific DNA Methylation Patterns |
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249 | (30) |
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16 Generating Multiple Base-Resolution DNA Methylomes Using Reduced Representation Bisulfite Sequencing |
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279 | (20) |
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17 A Protocol for the Determination of the Methylation Status of Gingival Tissue DNA at Specific CpG Islands |
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299 | (8) |
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18 Genome-Wide Analysis of Periodontal and Peri-Implant Cells and Tissues |
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307 | (20) |
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19 Differential Expression and Functional Analysis of High-Throughput - Omics Data Using Open Source Tools |
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327 | (20) |
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20 Exploring Genome-Wide Expression Profiles Using Machine Learning Techniques |
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347 | (20) |
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Part III Cells and Tissues |
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21 Embryonic Explant Culture: Studying Effects of Regulatory Molecules on Gene Expression in Craniofacial Tissues |
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367 | (14) |
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22 Oral Epithelial Cell Culture Model for Studying the Pathogenesis of Chronic Inflammatory Disease |
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381 | (22) |
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23 Fabrication and Characterization of Decellularized Periodontal Ligament Cell Sheet Constructs |
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403 | (10) |
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24 A Method to Isolate, Purify, and Characterize Human Periodontal Ligament Stem Cells |
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413 | (16) |
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25 Constructing Tissue Microarrays: Protocols and Methods Considering Potential Advantages and Disadvantages for Downstream Use |
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429 | (10) |
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26 Growing Adipose-Derived Stem Cells Under Serum-Free Conditions |
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439 | (8) |
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27 Quantitative Real-Time Gene Profiling of Human Alveolar Osteoblasts |
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447 | (14) |
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28 Proteomic Analysis of Dental Tissue Microsamples |
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461 | (20) |
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29 Characterization, Quantification, and Visualization of Neutrophil Extracellular Traps |
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481 | (18) |
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Index |
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