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E-grāmata: Pattern Recognition in Bioinformatics: 8th IAPR International Conference, PRIB 2013, Nice, France, June 17-20, 2013. Proceedings

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  • Formāts: PDF+DRM
  • Sērija : Lecture Notes in Bioinformatics 7986
  • Izdošanas datums: 04-Jul-2013
  • Izdevniecība: Springer-Verlag Berlin and Heidelberg GmbH & Co. K
  • Valoda: eng
  • ISBN-13: 9783642391590
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Pattern Recognition in Bioinformatics: 8th IAPR International Conference, PRIB 2013, Nice, France, June 17-20, 2013. ProceedingsPalielināt
  • Formāts: PDF+DRM
  • Sērija : Lecture Notes in Bioinformatics 7986
  • Izdošanas datums: 04-Jul-2013
  • Izdevniecība: Springer-Verlag Berlin and Heidelberg GmbH & Co. K
  • Valoda: eng
  • ISBN-13: 9783642391590
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This book constitutes the refereed proceedings of the 8th IAPR International Conference on Pattern Recognition in Bioinformatics, PRIB 2013, held in Nice, France, in June 2013. The 25 revised full papers presented were carefully reviewed and selected from 43 submissions. The papers are organized in topical sections on bio-molecular networks and pathway analysis; learning, classification, and clustering; data mining and knowledge discovery; protein: structure, function, and interaction; motifs, sites, and sequence analysis.
PART I Bio-molecular Networks and Pathway Analysis
A Fast Agglomerative Community Detection Method for Protein Complex Discovery in Protein Interaction Networks
1(12)
Mohammad S. Rahman
Alioune Ngom
Inferring Gene Regulatory Networks from Time-Series Expressions Using Random Forests Ensemble
13(10)
D.A.K. Maduranga
Jie Zheng
Piyushkumar A. Mundra
Jagath C. Rajapakse
Local Topological Signatures for Network-Based Prediction of Biological Function
23(12)
Wynand Winterbach
Piet Van Mieghem
Marcel J. T. Reinders
Huijuan Wang
Dick de Ridder
Mutational Genomics for Cancer Pathway Discovery
35(12)
Jeroen de Ridder
Jaap Kool
Anthony G. Uren
Jan Bot
Johann de Jong
Alistair G. Rust
Anton Berns
Maarten van Lohuizen
David J. Adams
Lodewyk Wessels
Marcel J. T. Reinders
Outlier Gene Set Analysis Combined with Top Scoring Pair Provides Robust Biomarkers of Pathway Activity
47(12)
Michael F. Ochs
Jason E. Farrar
Michael Considine
Yingying Wei
Soheil Meschinchi
Robert J. Arceci
Restricted Neighborhood. Search Clustering Revisited: An Evolutionary Computation Perspective
59(10)
Clara Pizzuti
Simona E. Rombo
PART II Learning, Classification, and Clustering
Class Dependent Feature Weighting and K-Nearest Neighbor Classification
69(10)
Elena Marchiori
Simultaneous Sample and Gene Selection Using T-score and Approximate Support Vectors
79(12)
Piyushkumar A. Mundra
Jagath C. Rajapakse
D.A.K. Maduranga
Versatile Sparse Matrix Factorization and Its Applications in High-Dimensional Biological Data Analysis
91(11)
Yifeng Li
Alioune Ngom
PART III Data Mining and Knowledge Discovery
A Local Structural Prediction Algorithm for RNA Triple Helix Structure
102(12)
Bay-Yuan Hsu
Thomas K.F. Wong
Wing-Kai Hon
Xinyi Liu
Tak-Wah Lam
Siu-Ming Yiu
Combining Protein Fragment Feature-Based Resampling and Local Optimisation
114(12)
Trent Higgs
Lukas Folkman
Bela Stantic
Experimental Determination of Intrinsic Drosophila Embryo Coordinates by Evolutionary Computation
126(12)
Alexander V. Spirov
Carlos E. Vanario-Alonso
Ekaterina N. Spirova
David M. Holloway
Identifying Informative Genes for Prediction of Breast Cancer Subtypes
138(11)
Iman Rezaeian
Yifeng Li
Martin Crozier
Eran Andrechek
Alioune Ngom
Luis Rueda
Lisa Porter
Predicting Therapeutic Targets with Integration of Heterogeneous Data Sources
149(10)
Yan-Fen Dai
Yin-Ying Wang
Xing-Ming Zhao
Using Predictive Models to Engineer Biology: A Case Study in Codon Optimization
159(13)
Alexey A. Gritsenko
Marcel J. T. Reinders
Dick de Ridder
PART IV Protein: Structure, Function, and Interaction
Active Learning for Protein Function Prediction in Protein-Protein Interaction Networks
172(12)
Wei Xiong
Luyu Xie
Jihong Guan
Shuigeng Zhou
Conditional Random Fields for Protein Function Prediction
184(12)
Thies Gehrmann
Marco Loog
Marcel J. T. Reinders
Dick de Ridder
Enhancing Protein Fold Prediction Accuracy Using Evolutionary and Structural Features
196(12)
Abdollah Dehzangi
Kuldip Paliwal
James Lyons
Alok Sharma
Abdul Sattar
Exploring Potential Discriminatory Information Embedded in PSSM to Enhance Protein Structural Class Prediction Accuracy
208(12)
Abdollah Dehzangi
Kuldip Paliwal
James Lyons
Alok Sharma
Abdul Sattar
Inferring the Association Network from p53 Sequence Alignment Using Granular Evaluations
220(11)
David K. Y. Chiu
Ramya Manjunath
Prediction of Non-genotoxic Hepatocarcinogenicity Using Chemical-Protein Interactions
231(11)
Chun-Wei Tung
PART V Motifs, Sites, and Sequences Analysis
A Structure Based Algorithm for Improving Motifs Prediction
242(11)
Sudipta Pathak
Vamsi Krishna Kundeti
Martin R. Schiller
Sanguthevar Rajasekaran
A Workflow for the Prediction of the Effects of Residue Substitution on Protein Stability
253(12)
Ruben Acuna
Zoe Lacroix
Jacques Chomilier
Estimating Viral Haplotypes in a Population Using k-mer Counting
265(12)
Raunaq Malhotra
Shruthi Prabhakara
Mary Poss
Raj Acharya
Fast Computation of Entropic Profiles for the Detection of Conservation in Genomes
277(12)
Matteo Comin
Morris Antonello
Author Index 289
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