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E-grāmata: Plant Genotyping: Methods and Protocols

  • Formāts: EPUB+DRM
  • Sērija : Methods in Molecular Biology 1245
  • Izdošanas datums: 05-Nov-2014
  • Izdevniecība: Humana Press Inc.
  • Valoda: eng
  • ISBN-13: 9781493919666
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  • Formāts: EPUB+DRM
  • Sērija : Methods in Molecular Biology 1245
  • Izdošanas datums: 05-Nov-2014
  • Izdevniecība: Humana Press Inc.
  • Valoda: eng
  • ISBN-13: 9781493919666
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The ability to produce vast amounts of DNA sequence data has enabled the discovery of molecular markers in model organisms, crops, as well as orphan species making genotyping the rate limiting factor, and this volume focuses on the different markers available and the low to high throughput genotyping of these markers. Given the diverse nature of some of these systems, an overview is provided on the identification of markers from sequence data, as well as data analysis with example applications once the genotyping data has been generated. Written in the successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, and notes on troubleshooting and avoiding known pitfalls.

Authoritative and easily accessible, Plant Genotyping: Methods and Protocols is aimed at plant molecular biologists, geneticists, plant breeders and ecologists who have a target question and need to know the most suitable markers and genotyping system to use.

Preface v
Contributors ix
1 Advances in Plant Genotyping: Where the Future Will Take Us
1(12)
Dhwani A. Patel
Manuel Zander
Jessica Dalton-Morgan
Jacqueline Batley
2 Molecular Marker Applications in Plants
13(16)
Alice C. Hayward
Reece Tollenaere
Jessica Dalton-Morgan
Jacqueline Batley
3 Bioinformatics: Identification of Markers from Next-Generation Sequence Data
29(20)
Pradeep Ruperao
David Edwards
4 Molecular Marker Databases
49(14)
Kaitao Lai
Michal Tadeusz Lorenc
David Edwards
5 Plant Genotyping Using Fluorescently Tagged Inter-Simple Sequence Repeats (ISSRs): Basic Principles and Methodology
63(14)
Linda M. Prince
6 SSR Genotyping
77(14)
Annaliese S. Mason
7 Genotyping Analysis Using an RFLP Assay
91(10)
Shutao Dai
Tan Long
8 DNA Barcoding for Plants
101(18)
Natasha de Vere
Tim C.G. Rich
Sarah A. Trinder
Charlotte Long
9 Multiplexed Digital Gene Expression Analysis for Genetical Genomics in Large Plant Populations
119(22)
Christian Obermeier
Bertha M. Salazar-Colqui
Viola Spamer
Rod Snowdon
10 SNP Genotyping by Heteroduplex Analysis
141(10)
Norma Paniego
Corina Fusari
Veronica Lia
Andrea Puebla
11 Application of the High-Resolution Melting Technique for Gene Mapping and SNP Detection in Plants
151(10)
David Chagne
12 Challenges of Genotyping Polyploid Species
161(8)
Annaliese S. Mason
13 Genomic Reduction Assisted Single Nucleotide Polymorphism Discovery Using 454-Pyrosequencing
169(14)
Peter J. Maughan
Joshua A. Udall
Eric N. Jellen
14 Inter-SINE Amplified Polymorphism (ISAP) for Rapid and Robust Plant Genotyping
183(10)
Torsten Wenke
Kathrin M. Seibt
Thomas Dobel
Katja Muders
Thomas Schmidt
15 Screening of Mutations by TILLING in Plants
193(12)
Nian Wang
Lei Shi
16 Gene Analysis Using Mass Spectrometric Cleaved Amplified Polymorphic Sequence (MS-CAPS) with Matrix-Assisted Laser Desorption Ionization Time-of-Flight Mass Spectrometry (MALDI-TOF)
205(10)
Hideyuki Kajiwara
17 Quantitative SNP Genotyping of Polyploids with MassARRAY and Other Platforms
215(28)
Marcelo Mollinari
Oliver Serang
18 SNP Genotyping Using KASPar Assays
243(14)
Scott M. Smith
Peter J. Maughan
19 Skim-Based Genotyping by Sequencing
257(14)
Agnieszka A. Golicz
Philipp E. Bayer
David Edwards
20 The Restriction Enzyme Target Approach to Genotyping by Sequencing (GBS)
271(10)
Elena Hilario
21 Methods for the Design, Implementation, and Analysis of Illumina Infinium™ SNP Assays in Plants
281(18)
David Chagne
Luca Bianco
Cindy Lawley
Diego Micheletti
Jeanne M.E. Jacobs
22 Use of the Illumina GoldenGate Assay for Single Nucleotide Polymorphism (SNP) Genotyping in Cereal Crops
299(14)
Shiaoman Chao
Cindy Lawley
Index 313