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E-grāmata: Plant Lipid Signaling Protocols

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  • Formāts: PDF+DRM
  • Sērija : Methods in Molecular Biology 1009
  • Izdošanas datums: 17-May-2013
  • Izdevniecība: Humana Press Inc.
  • Valoda: eng
  • ISBN-13: 9781627034012
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  • Formāts: PDF+DRM
  • Sērija : Methods in Molecular Biology 1009
  • Izdošanas datums: 17-May-2013
  • Izdevniecība: Humana Press Inc.
  • Valoda: eng
  • ISBN-13: 9781627034012
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As scientist begin to understand the complexity of lipid signaling and its roles in plant biology, there is an increasing interest in their analysis. Due to the low abundancy and transient nature of some of these hydrophobic compounds, this is not always easy. In Plant Lipid Signaling Protocols, expert researchers in the field detail experimental approaches by which plant signaling lipids can be studied. These methods and techniques include analysis of plant signaling lipids, including detailed protocols to detect various relevant compounds by targeted or non-targeted approaches; to assay relevant enzyme activities in biological material or using recombinant enzymes; to test for specific binding of signaling lipids to protein partners; or to visualize signaling lipids or lipid-derived signals in living plant cells. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and key tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Plant Lipid Signaling Protocols aids plant researchers in the continuing to study the roles of lipid signals.

This book presents timely and important tools needed to elucidate particular roles of phosphoinositides in plants. It includes easy-to-use, reproducible protocols and contains expert tips on troubleshooting and avoiding known pitfalls.
Preface v
Contributors ix
Part I Lipid Analyses
1 Analyzing Plant Signaling Phospholipids Through 32Pi-Labeling and TLC
3(14)
Teun Munnik
Xavier Zarza
2 Analysis of D3-,4-,5-Phosphorylated Phosphoinositides Using HPLC
17(8)
Teun Munnik
3 Mass Measurement of Polyphosphoinositides by Thin-Layer and Gas Chromatography
25(8)
Mareike Heilmann
Ingo Hellmann
4 Measurement of Inositol (1,4,5) Trisphosphate in Plant Tissues by a Competitive Receptor Binding Assay
33(10)
Ingo Heilmann
Imara Y. Perera
5 Quantification of Diacylglycerol by Mass Spectrometry
43(12)
Katharina vom Dorp
Isabel Dombrink
Peter Dormann
6 Distinguishing Phosphatidic Acid Pools from De Novo Synthesis, PLD, and DGK
55(8)
Steven A. Arisz
Teun Munnik
7 Use of Phospholipase A2 for the Production of Lysophospholipids
63(6)
Steven A. Arisz
Teun Munnik
8 Analysis and Quantification of Plant Membrane Lipids by Thin-Layer Chromatography and Gas Chromatography
69(10)
Vera Wewer
Peter Dormann
Georg Holzl
9 Lipidomic Analysis of Plant Membrane Lipids by Direct Infusion Tandem Mass Spectrometry
79(14)
Sunitha Shiva
Hieu Sy Vu
Mary R. Roth
Zhenguo Zhou
Shantan Reddy Marepally
Daya Sagar Nune
Gerald H. Lushington
Mahesh Visvanathan
Ruth Welti
10 Detection and Quantification of Plant Sphingolipids by LC-MS
93(10)
Jonathan E. Markham
11 Analysis of Defense Signals in Arabidopsis thaliana Leaves by Ultra-performance Liquid Chromatography/Tandem Mass Spectrometry: Jasmonates, Salicylic Acid, Abscisic Acid
103(12)
Nadja Stingl
Markus Krischke
Agnes Fekete
Martin J. Mueller
12 Analysis of Fatty Acid Amide Hydrolase Activity in Plants
115(14)
Sang-Chul Kim
Lionel Faure
Kent D. Chapman
13 Ionization Behavior of Polyphosphoinositides Determined via the Preparation of pH Titration Curves Using Solid-State 31P NMR
129(16)
Zachary T. Graber
Edgar E. Kooijman
Part II Enzyme Activities
14 Phosphatidylinositol Synthase Activity from Plant Membrane Fractions and from E. coli - Expressed Recombinant Peptides
145(18)
Sylvie Collin
Francoise Cochet
15 Phosphatidylinositol 4-Kinase and Phosphatidylinositol 4-Phosphate 5-Kinase Assays
163(12)
Yang Ju Im
Irena Brglez
Catherine Dieck
Imara T. Perera
Wendy F. Boss
16 Assaying Inositol and Phosphoinositide Phosphatase Enzymes
175(12)
Janet L. Donahue
Mustafa Ercetin
Glenda E. Gillaspy
17 Determination of Phospholipase C Activity In Vitro
187(6)
S.M. Teresa Herndndez-Sotomayor
J. Armando Munoz-Sanchez
18 Assaying Nonspecific Phospholipase C Activity
193(12)
Premysl Pejchar
Gunther F.E. Scherer
Jan Martinec
19 Assaying Different Types of Plant Phospholipase D Activities In Vitro
205(14)
Kirk L. Pappan
Xuemin Wang
20 Measuring PLD Activity In Vivo
219(14)
Teun Munnik
Ana M. Laxalt
21 Assaying Plant Phosphatidic Acid Phosphatase Activity
233(8)
Tuki Nakamura
22 Assay of Phospholipase A Activity
241(12)
Michael Heinze
Werner Roos
Part III Protein-Lipid Interactions
23 Lipid-Binding Analysis Using a Fat Blot Assay
253(8)
Teun Munnik
Magdalena Wierzchowiecka
24 Liposome-Binding Assays to Assess Specificity and Affinity of Phospholipid-Protein Interactions
261(12)
Magdalena M. Julkowska
Johanna M. Rankenberg
Christa Testerink
25 Lipid Affinity Beads: From Identifying New Lipid Binding Proteins to Assessing Their Binding Properties
273(10)
Fionn McLoughlin
Christa Testerink
Part IV Imaging
26 Using Genetically Encoded Fluorescent Reporters to Image Lipid Signalling in Living Plants
283(8)
Joop E.M. Vermeer
Teun Munnik
27 Imaging Changes in Cytoplasmic Calcium Using the Yellow Cameleon 3.6 Biosensor and Confocal Microscopy
291(12)
Sarah J. Swanson
Simon Gilroy
Index 303