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Research in Computational Molecular Biology: 20th Annual Conference, RECOMB 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings 1st ed. 2016 [Mīkstie vāki]

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  • Formāts: Paperback / softback, 274 pages, height x width: 235x155 mm, weight: 4686 g, 41 Illustrations, color; 23 Illustrations, black and white; XXXIV, 274 p. 64 illus., 41 illus. in color., 1 Paperback / softback
  • Sērija : Lecture Notes in Bioinformatics 9649
  • Izdošanas datums: 08-Apr-2016
  • Izdevniecība: Springer International Publishing AG
  • ISBN-10: 3319319566
  • ISBN-13: 9783319319568
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  • Formāts: Paperback / softback, 274 pages, height x width: 235x155 mm, weight: 4686 g, 41 Illustrations, color; 23 Illustrations, black and white; XXXIV, 274 p. 64 illus., 41 illus. in color., 1 Paperback / softback
  • Sērija : Lecture Notes in Bioinformatics 9649
  • Izdošanas datums: 08-Apr-2016
  • Izdevniecība: Springer International Publishing AG
  • ISBN-10: 3319319566
  • ISBN-13: 9783319319568
This book constitutes the proceedings of the 20th Annual Conference on Research in Computational Molecular Biology, RECOMB 2016, held in Santa Monica, CA, USA, in April 2016.









The 15 regular papers presented in this volume were carefully reviewed and selected from 172 submissions. 20 short abstracts are included in the back matter of the volume. They report on original research in all areas of computational molecular biology and bioinformatics.
RECOMB Retrospective
The Second Decade of the International Conference on Research in Computational Molecular Biology (RECOMB)
3(16)
Farhad Hormozdiari
Fereydoun Hormozdiari
Carl Kingsford
Paul Medvedev
Fabio Vandin
Extended Abstracts
A MAD-Bayes Algorithm for State-Space Inference and Clustering with Application to Querying Large Collections of ChIP-Seq Data Sets
19(18)
Chandler Zuo
Kailei Chen
Sunduz Keles
Accurate Recovery of Ribosome Positions Reveals Slow Translation of Wobble-Pairing Codons in Yeast
37(16)
Hao Wang
Joel McManus
Carl Kingsford
Multitask Matrix Completion for Learning Protein Interactions Across Diseases
53(12)
Meghana Kshirsagar
Jaime G. Carbonell
Judith Klein-Seetharaman
Keerthiram Murugesan
pathTiMEx: Joint Inference of Mutually Exclusive Cancer Pathways and Their Dependencies in Tumor Progression
65(18)
Simona Cristea
Jack Kuipers
Niko Beerenwinkel
Clonality Inference from Single Tumor Samples Using Low Coverage Sequence Data
83(12)
Nilgun Donmez
Salem Malikic
Alexander W. Wyatt
Martin E. Gleave
Colin C. Collins
S. Cenk Sahinalp
Flexible Modelling of Genetic Effects on Function-Valued Traits
95(16)
Nicolo Fusi
Jennifer Listgarten
MetaFlow: Metagenomic Profiling Based on Whole-Genome Coverage Analysis with Min-Cost Flows
111(11)
Ahmed Sobih
Alexandra I. Tomescu
Veli Makinen
LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-rotamer-like Efficiency
122(15)
Mark A. Hallen
Jonathan D. Jou
Bruce R. Donald
Improving Bloom Filter Performance on Sequence Data Using k-mer Bloom Filters
137(15)
David Pellow
Darya Filippova
Carl Kingsford
Safe and Complete Contig Assembly Via Omnitigs
152(12)
Alexandru I. Tomescu
Paul Medvedev
Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants
164(12)
Alexander Artyomenko
Nicholas C. Wu
Serghei Mangul
Eleazar Eskin
Ren Sun
Alex Zelikovsky
Structural Variation Detection with Read Pair Information---An Improved Null-Hypothesis Reduces Bias
176(13)
Kristoffer Sahlin
Mattias Franberg
Lars Arvestad
On Computing Breakpoint Distances for Genomes with Duplicate Genes
189(15)
Mingfu Shao
Bernard M. E. Moret
New Genome Similarity Measures Based on Conserved Gene Adjacencies
204(21)
Luis Antonio B. Kowada
Daniel Doerr
Simone Dantas
Jens Stoye
Fast Phylogenetic Biodiversity Computations Under a Non-uniform Random Distribution
225(14)
Constantinos Tsirogiannis
Brody Sandel
Short Abstracts
SLICER: Inferring Branched, Nonlinear Cellular Trajectories from Single Cell RNA-seq Data
239(2)
Joshua D. Welch
Ziqing Liu
Li Wang
Junjie Lu
Paul Lerou
Jeremy Purvis
Li Qian
Alexander Hartemink
Jan F. Prins
Multi-track Modeling for Genome-Scale Reconstruction of 3D Chromatin Structure from Hi-C Data
241(1)
Chenchen Zou
Yuping Zhang
Zhengqing Ouyang
Revealing the Genetic Basis of Immune Traits in the Absence of Experimental Immunophenotyping
242(2)
Yael Steuerman
Irit Gat-Viks
Shall We Dense? Comparing Design Strategies for Time Series Expression Experiments
244(2)
Emre Sefer
Ziv-Bar Joseph
Enabling Privacy Preserving GWAS in Heterogeneous Human Populations
246(2)
Sean Simmons
Cenk Sahinalp
Bonnie Berger
Efficient Privacy-Preserving Read Mapping Using Locality Sensitive Hashing and Secure Kmer Voting
248(2)
Victoria Popic
Serafim Batzoglou
Finding Mutated Subnetworks Associated with Survival in Cancer
250(1)
Tommy Hansen
Fabio Vandin
Multi-State Perfect Phylogeny Mixture Deconvolution and Applications to Cancer Sequencing
251(1)
Mohammed El-Kebir
Gryte Satas
Layla Oesper
Benjamin J. Raphael
Tree Inference for Single-Cell Data
252(1)
Katharina John
Jack Kuipers
Niko Beerenwinkel
mLDM: A New Hierarchical Bayesian Statistical Model for Sparse Microbial Association Discovery
253(2)
Yuqing Yang
Ning Chen
Ting Chen
Low-Density Locality-Sensitive Hashing Boosts Metagenomic Binning
255(3)
Yunan Luo
Jianyang Zeng
Bonnie Berger
Jian Peng
metaSPAdes: A New Versatile de novo Metagenomics Assembler
258(1)
Sergey Nurk
Dmitry Meleshko
Anton Korobeynikov
Pavel Pevzner
Distributed Gradient Descent in Bacterial Food Search
259(2)
Shashank Singh
Sabrina Rashid
Saket Navlakha
Ziv Bar-Joseph
AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX Experiments
261(2)
Phuong Dao
Jan Hoinka
Yijie Wang
Mayumi Takahashi
Jiehua Zhou
Fabrizio Costa
John Rossi
John Burnett
Rolf Backofen
Teresa M. Przytycka
Fast Bayesian Inference of Copy Number Variants Using Hidden Markov Models with Wavelet Compression
263(1)
John Wiedenhoeft
Eric Brugel
Alexander Schliep
Allele-Specific Quantification of Structural Variations in Cancer Genomes
264(1)
Yang Li
Shiguo Zhou
David C. Schwartz
Jian Ma
Assembly of Long Error-Prone Reads Using de Bruijn Graphs
265(1)
Yu Lin
Max W. Shen
Jeffrey Yuan
Mark Chaisson
Pavel A. Pevzner
Locating a Tree in a Reticulation-Visible Network in Cubic Time
266(1)
Andreas D. M. Gunawan
Bhaskar DasGupta
Louxin Zhang
Joint Alignment of Multiple Protein-Protein Interaction Networks via Convex Optimization
267(3)
Somaye Hashemifar
Qixing Huang
Jinbo Xu
Complexes Detection in Biological Networks via Diversified Dense Subgraphs Mining
270(3)
Xiuli Ma
Guangyu Zhou
Jingjing Wang
Jian Peng
Jiawei Han
Author Index 273