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E-grāmata: Methods in Actinobacteriology

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  • Sērija : Springer Protocols Handbooks
  • Izdošanas datums: 01-Jan-2022
  • Izdevniecība: Springer-Verlag New York Inc.
  • Valoda: eng
  • ISBN-13: 9781071617281
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  • Formāts: EPUB+DRM
  • Sērija : Springer Protocols Handbooks
  • Izdošanas datums: 01-Jan-2022
  • Izdevniecība: Springer-Verlag New York Inc.
  • Valoda: eng
  • ISBN-13: 9781071617281
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This volume details techniques on the study of Isolation, characterization, and exploration of actinobacteria in industrial, food, agricultural, and environmental microbiology. Chapters cover a wide range of basic and advanced techniques associated with research on isolation, characterization and identification of actinobacteria in soil, sediment, estuarine, water, Saltpan, Mangroves, plants, lichens, sea weeds, sea grass, animals-crab, snail, shrimp. 

Authoritative and cutting-edge, Methods in Actinobacteriology aims to be a useful practical guide to researches to help further their study in this field.


Foreword v
Preface ix
Contributors xix
1 Isolation of Actinobacteria from Soil and Marine Sediment Samples
1(6)
T. Savitha
Ashraf Khalifa
A. Sankaranarayanan
2 Isolation of Actinobacteria from Water Sources
7(6)
Tamalika Chakraborty
Sumana Roy
Dipanjan Mandal
Jeenatara Begum
Abhijit Sengupta
3 Isolation of Actinobacteria from Deep Sea
13(6)
Aparana Kumari
K. V. Bhaskara Rao
4 Isolation of Actinobacteria from Estuaries
19(4)
Ashraf Khalifa
A. Sankaranarayanan
5 Isolation of Actinobacteria from Sponges
23(4)
Neethu Kamarudheen
Kokati Venkata Bhaskara Rao
6 Isolation of Actinobacteria from Shrimp
27(4)
A. S. Shijila Rani
S. Babu
A. Anbukumaran
P. Prakash
S. Veeramani
V. Ambikapathy
7 Isolation of Actinobacteria from Coral Reef
31(4)
S. Babu
A. S. Shijila Rani
V. Ambikapathy
P. Prakash
A. Anbukumaran
8 Isolation of Actinobacteria from Earthworm Cast
35(4)
V. Ambikapathy
A. S. Shijila Rani
A. Anbukumaran
R. Shanmugapriya
S. Babu
9 Isolation of Actinobacteria from Compost Samples
39(6)
T. Savitha
Ashraf Khalifa
A. Sankaranarayanan
10 Isolation of Gut Actinobacteria from Fecal and Tissue Samples
45(6)
Priyanka Sarkar
11 Isolation of Gut Actinobacteria from Termites
51(10)
S. Malavika
Sahana Kranthi
H. S. Shishira Rao
Shreyanka S. Moily
A. Martin Paul
12 Isolation of Gut Actinobacteria from Fishes
61(14)
S. Thejaswini
Sruthy Jojy
Aditi Vijayan
A. Martin Paul
13 Isolation of Actinobacteria from Mangrove Plants
75(8)
V. Ambikapathy
S. Babu
A. Anbukumaran
A. S. Shijila Rani
P. Prakash
14 Isolation of Actinobacteria from Seaweeds
83(6)
Apsara S. Babu
Kokati Venkata Bhaskara Rao
15 Isolation of Actinobacteria from Hills
89(8)
M. Veerapagu
K. R. Jeya
A. Sankaranarayanan
16 Isolation of Endophytic Actinobacteria from Flowers, Fruits, and Seeds of Higher Plants
97(12)
D. Jayanthi
A. Martin Paul
Leena Sebastian
17 Isolation Actinobacteria from Desert Soils
109(4)
Ashraf Khalifa
A. Sankaranarayanan
18 Methods for Isolation of Epiphytic Actinobacteria from Rhizosphere of Spermatophytes
113(8)
S. Shravya
S. J. Meghana
D. Jayanthi
19 Isolation of Epiphytic Actinobacteria from Lichens
121(10)
M. S. Shabeena Banu
T. Nargis Begum
G. Vinothini
D. Dhanasekaran
N. Thajuddin
20 Isolation of Endophytic Actinobacteria from Lichens
131(10)
M. S. Shabeena Banu
T. Nargis Begum
D. Dhanasekaran
N. Thajuddin
21 Isolation of Psychrophilic and Psychrotolerant Actinobacteria
141(4)
Manigundan Kaari
Abirami Baskaran
Gopikrishnan Venugopal
Radhakrishnan Manikkam
Parli V. Bhaskar
22 Isolation of Halophilic Actinobacteria from Different Habitats
145(10)
A. Martin Paul
D. Jayanthi
23 Isolation of Thermophilic Actinobacteria from Different Habitats
155(8)
Pranjali Chole
Lokesh Ravi
Kannabiran Krishnan
24 Isolation of Stone-Dwelling Actinobacteria
163(6)
Shabari Girish
Lokesh Ravi
Kannabiran Krishnan
25 Cultivation Techniques of Rare Actinobacteria
169(12)
Vijayakumar Ramasamy
Thirumurugan Durairaj
Cholarajan Alagappan
Raja Suresh Selvapuram Sudalaimuthu
26 Chemotaxonomical Characterization of Actinobacteria
181(6)
Vijayakumar Ramasamy
Raja Suresh Selvapuram Sudalaimuthu
27 Application of Bioinformatic Tools for Phylogenetic Analysis
187(6)
Manigundan Kaari
Jerrine Joseph
Radhakrishnan Manikkam
Mary Shamya
Wilson Aruni
28 Methods for Whole-Genome Analysis of Actinobacteria Through Bioinformatics Approaches
193(14)
I. Sarkar
G. Sen
A. Sen
29 Nanopore-Based Long-Read Sequencing Technology to Obtain Highly Contiguous Whole-Genome Sequence of Actinobacterial Genomes like Streptomyces Sp.: A Complete Guide for Actinobacterial Whole Genome Sequencing Project Using Nanopore
207(14)
Sankaranarayanan Gomathinayagam
Loganathan Karthik
Kodiveri Muthukaliannan Gothandam
30 Mining Genomes of Actinobacteria
221(8)
Sushant Parab
Davide Cora
Federico Bussolino
31 Comparative Genomics of Actinobacteria
229(8)
Sushant Parab
Davide Cora
Federico Bussolino
32 Biosynthetic Gene Cluster Analysis in Micromonospora Species Using ANTISMASH: Secondary Metabolite Genome Mining Pipeline
237(10)
Mukesh Kumar Manickasamy
Rajagopal Narayanan
Dhanasekaran Dharmadurai
33 Biosynthetic Gene Cluster Analysis in Actinobacterial Genus Streptomyces
247(16)
Marketa Macho
Daniela Ewe
Vishal Ahuja
Jihen Thabet
Avik Banerjee
Kumar Saurav
Subhasish Saha
34 PCR-Based Determination of Secondary Metabolite Genes in Actinobacterial Cultures
263(4)
Manigundan Kaari
Abirami Baskaran
Gopikrishnan Venugopal
Jerrine Joseph
Radhakrishnan Manikkam
35 Molecular Mass Determination of Bacteriocin by SDS-PAGE Analysis
267(6)
Santhosh Arul
M. Jayashankar
Haripriya Dayalan
36 MALDI-TOF Analysis of Actinobacterial Peptides with Respect to MASCOT Database
273(12)
Shanmugaraj Gowrishankar
Arumugam Kamaladevi
Shunmugiah Karutha Pandian
37 Protocols for Preclinical Evaluation and Molecular Docking of Antimicrobial Compounds from Streptomyces sp., Drug Likeliness Evaluation, ADME-Toxicity Investigation, Docking Modes Between the Ligand and the Target Enzyme, and Active Site Prediction
285(8)
B. K. Anirudh Sreenivas
B. Akshaya
Lokesh Ravi
Kannabiran Krishnan
38 Energy-Based Pharmacophore Hypothesis Combined with Molecular Simulation Protocol for the Screening of Bioactive Compounds from the Class of Actinobacteria
293(14)
Muthu Kumar Thirunavukkarasu
Ramanathan Karuppasamy
39 Receptor Cavity-Based Approach Combined with Autodock Protocol for the Screening of Antiviral Compounds from Streptomyces sp
307(12)
K. Rohini
V. Shanthi
40 Pharmacophore-Based Hypothesis Combined with Molecular Docking Protocol for the Screening of Anticancer Compounds from Streptomyces
319(16)
Saranyadevi Subburaj
Priyanka Ramesh
Shanthi Veerappapillai
41 Methods of Identification and Validation of Drug Target
335(4)
Jerrine Joseph
Radhakrishnan Manikkam
Manigundan Kaari
Gopikrishnan Venugopal
Mary Shamya
Wilson Aruni
42 Transcriptome Profiles of Streptomyces sp
339(8)
Sushant Parab
Davide Cora
Federico Bussolino
43 Culture of Actinobacteria, Isolation and Characterization of their Bioactive Compounds
347(20)
Charles Santhanaraju Vairappan
44 Miniaturized Production of Bioactive Extracts from Actinobacteria
367(4)
Abirami Baskaran
Radhakrishnan Manikkam
Manigundan Kaari
Jerrine Joseph
Gopikrishnan Venugopal
Balagurunathan Ramasamy
45 Screening, Characterization, and Identification of Antibacterial Compounds from Actinobacteria
371(8)
T. Savitha
Ashraf Khalifa
A. Sankaranarayanan
46 Isolation, Identification, and Screening of Polyene Antifungal Compound Producing Streptomyces sampsonii MDCE7 from Agroforestry Soil
379(12)
Srinivasan Radhakrishnan
Mohan Varadharajan
47 Screening of Actinobacterial Cultures for Antimycobacterial Activity Using Mycobacterium smegmatis
391(4)
Ramachandran Chelliah
Deog-Hwan Oh
48 Screening of Actinobacterial Extracts/Compounds for Antimycobacterial Activity by Luciferase Reporter Phage (LRP) Assay
395(6)
Shuai Wei
Shucheng Liu
Ramachandran Chelliah
Deog-Hwan Oh
49 Screening of Actinobacteria for Anti-TB Activity by Microplate Alamar Blue Assay (MABA)
401(4)
Shuai Wei
Shucheng Liu
Ramachandran Chelliah
Deog-Hwan Oh
50 Screening of Actinobacteria for Anti-TB Activity by Agar Dilution Assay
405(2)
Ramachandran Chelliah
Deog-Hwan Oh
51 Antiplasmodial Activity of Halophilic Actinobacteria
407(6)
Dharumadurai Dhanasekaran
Saravanan Karthikeyan
52 An In Vitro Antiamoebic Activity of Actinobacteria
413(6)
Karthiyayini Balakrishnan
Dhanasekaran Dharumadurai
Thirumurugan Ramasamy
Muthuselvam Manickam
53 Screening for Antiviral Activity: MTT Assay
419(4)
Ramachandran Chelliah
Fazle Elahi
Deog-Hwan Oh
54 Screening for Anticancer Activity: 3-(4,5-Dimethylthiazol-2-yl)-2, 5-Diphenyltetrazolium (MTT) Assay
423(4)
Ramachandran Chelliah
Deog-Hwan Oh
55 Screening for Anticancer Activity: Dual Staining Method
427(4)
Ramachandran Chelliah
Deog-Hwan Oh
56 Screening for Anticancer Activity: Neutral Red Uptake Assay
431(4)
Ramachandran Chelliah
Deog-Hwan Oh
57 Screening for Anticancer Activity: Lactic Acid Dehydrogenase Assay
435(4)
Ramachandran Chelliah
Deog-Hwan Oh
58 Screening for Anticancer Activity: DNA Fragmentation Assay
439(4)
Inamul Hasan Madar
Ghazala Sultan
Ramachandran Chelliah
Deog-Hwan Oh
59 Screening for Anticancer Activity: Trypan Blue Exclusion Assay
443(6)
Inamul Hasan Madar
Ghazala Sultan
Ramachandran Chelliah
Deog-Hwan Oh
60 In Vitro Evaluation of Antimitotic Properties of Actinobacterial Extracts Using Onion Root Tip Assay
449(4)
Gopikrishnan Venugopal
Radhakrishnan Manikkam
Manigundan Kaari
Shanmugasundaram Thangavel
Jerrine Joseph
61 Screening for Antioxidant Activity: Diphenylpicrylhydrazine (DPPH) Assay
453(2)
Momna Rubab
Ramachandran Chelliah
Deog-Hwan Oh
62 Screening for Antioxidant Activity: Nitric Oxide Scavenging Assay
455(2)
Ramachandran Chelliah
Eric Banan-MwineDaliri
Deog-Hwan Oh
63 Screening for Antioxidant Activity: Metal Chelating Assay
457(2)
Ramachandran Chelliah
Deog-Hwan Oh
64 Screening for Antioxidant Activity: Total Antioxidant Assay
459(2)
Ramachandran Chelliah
Eric Banan-MwineDaliri
Deog-Hwan Oh
65 Screening for Antioxidant Activity: Hydrogen Peroxide Scavenging Assay
461(2)
Ramachandran Chelliah
Eric Banan-MwineDaliri
Deog-Hwan Oh
66 In Vitro Evaluation of Actinobacterial Extracts for Anti-Inflammatory Properties
463(4)
Abirami Baskaran
Manigundan Kaari
Mary Shamya
Jerrine Joseph
Shanmugasundaram Thangavel
Radhakrishnan Manikkam
67 Screening and Production of Antifreeze Proteins from Actinobacteria
467(4)
Abirami Baskaran
Radhakrishnan Manikkam
Manigundan Kaari
Gopikrishnan Venugopal
Somasundaram Thirugnanasambandham
Parli V. Bhaskar
68 In Vitro Evaluation of Actinobacterial Extracts for Immunomodulatory Properties
471(4)
Abirami Baskaran
Manigundan Kaari
Radhakrishnan Manikkam
Gopikrishnan Venugopal
Jerrine Joseph
Shanmugasundaram Thangavel
Somasundaram Thirugnanasambandham
69 Screening of Actinobacteria for Enzyme Inhibitor Activity
475(4)
Ramachandran Chelliah
Eric Banan-MwineDaliri
Deog-Hwan Oh
70 Screening of Actinobacteria for Quorum Sensing Inhibition
479(4)
Ramachandran Chelliah
Eric Banan-MwineDaliri
Deog-Hwan Oh
71 Screening of Actinobacterial Extracts for Anti-biofilm Activity
483(4)
Ramachandran Chelliah
Eric Banan-MwineDaliri
Deog-Hwan Oh
72 Screening of Actinobacteria for Microbial Induced Calcium Precipitation (MICP)
487(4)
Manigundan Kaari
Abirami Baskaran
Gopikrishnan Venugopal
Radhakrishnan Manikkam
73 Immobilization of Actinobacterial Cells: Sodium Alginate and Calcium Chloride Method
491(4)
Gopikrishnan Venugopal
Manigundan Kaari
Abirami Baskaran
Radhakrishnan Manikkam
74 Production of Actinobacteria Amylase by Fermentation in Solid State Using Residues of Licuri Palm (Syagrus coronata)
495(10)
Milena Santos Aguiar
Rafael Resende Maldonado
Andrea Limoeiro Carvalho
Elizama Aguiar-Oliveira
75 Production of Lipase by Actinobacteria
505(8)
Isabely Fernanda Pizarro
Handray Fernandes de Souza
Janaina dos Santos Ferreira
Rafael Resende Maldonado
Eliana Setsuko Kamimura
Elizama Aguiar-Oliveira
76 Isolation and Cultivation of Actinobacteria by Submerged Fermentation for the Production of Keratinase
513(8)
Rafael Resende Maldonado
Tais Rosangela Correia Souza
Simone Kubeneck
Elizama Aguiar-Oliveira
Helen Treichel
77 Screening of Cellulase from Actinobacteria
521(6)
Varsha N. Swamy
M. A. Haneen
M. Jayashankar
78 Screening of Pectinase from Actinobacteria
527(6)
M. A. Haneen
M. Jayashankar
Varsha N. Swamy
79 Screening of Protease from Actinobacteria
533(4)
Ashwitha Gopal
Varsha N. Swamy
Santhosh Arul
M. Jayashankar
80 Screening and Analysis of Actinobacterial Bioherbicides for Weed Management
537(8)
K. Prem Anand
K. Suthindhiran
81 In Vitro Assessment of Actinobacteria for Survivability Under Simulated Gastrointestinal Transit
545(4)
Vinothini Gopal
M. S. Shabeena Banu
Seema Siddharthan
Dhanasekaran Dharumadurai
82 In Vitro Assessment of Actinobacterial Isolates for Probiotic Properties Assessment of Actinobacteria for Safety Traits
549(4)
Vinothini Gopal
Dhanasekaran Dharumadurai
83 Screening of Actinobacterial Probiotics by Anti-Pathogenic Activity Test
553(10)
Peng Chen
Zhongkun Zhou
Yunhao Ma
Rentao Zhang
Mengze Sun
84 Screening and Analysis of Probiotic Actinobacteria in Poultry Farming
563(8)
Monica Roberta Mazalli
Rafael Resende Maldonado
Elizama Aguiar-Oliveira
85 Vitamin B12 Producing Actinobacteria as Probiotics for Poultry Production
571(18)
Firdosh Shah
Mitesh Dwivedi
86 Qualitative and Quantitative Estimation of Phosphate Solubilizing Actinobacteria
589(6)
Shreya Desai
Natarajan Amaresan
87 Estimation of Nitrogen Production by Actinobacteria
595(4)
Shreya Desai
Natarajan Amaresan
88 Screening of Actinobacteria for Siderophore Production
599(4)
Caroline Mercy Andrew Swamidoss
Ramachandran Chelliah
Deog-Hwan Oh
89 Isolation and Screening of Symbiotic Actinobacteria from Root Nodules of Actinorhizal Plant Casuarina sp
603(8)
Dhanasekaran Dharumadurai
Karthikeyan Saravanan
90 Biocontrol Activity of Actinobacteria Against Plant Pathogens
611(4)
Shreya Desai
Natarajan Amaresan
91 An In Vitro Nematicidal Activity of Actinobacteria: Juvenile Mortality and Egg Hatching Inhibition
615(6)
Vijayakumar Vishnu Raja
Dharumadurai Dhanasekaran
92 Estimation of Auxin Production by Actinobacteria
621(4)
Shreya Desai
Natarajan Amaresan
93 Screening of Actinobacteria for Mosquitocidal Activity
625(4)
Caroline Mercy Andrew Swamidoss
Ramachandran Chelliah
Deog-Hwan Oh
94 Extraction, Characterization, and Identification of Odorous Metabolites from Streptomyces
629(12)
Dhanasekaran Dharumadurai
Karthikeyan Saravanan
Chandraleka Saravanan
Sivaranjani Govindhan
Latha Selvanathan
95 Screening of Actinobacteria for Biosurfactant Production
641(6)
Ramachandran Chelliah
Eric Banan-Mwine Daliri
Deog-Hwan Oh
96 Optimization and Characterization of Biosurfactant from Streptomyces
647(14)
Vishal Ahuja
Marketa Macho
Jihen Thabet
Avik Banerjee
Daniela Ewe
Subhasish Saha
Kumar Saurav
97 Production of Vitamin B12 from Streptomyces Species
661(6)
M. Camil Rex
B. Akshaya
Lokesh Ravi
Kannabiran Krishnan
98 Screening of Microbes for the Production of Pigment (Melanin)
667(4)
Ramachandran Chelliah
Deog-Hwan Oh
99 Exploration and Characterization of Melanin Pigment Produced by Actinomycetes
671(12)
Puja Gupta
Madangchanok Imchen
Ranjith Kumavath
100 Isolation and Production of Prodigiosin Pigments from Streptomyces spp
683(12)
Leena Sebastian
A. Martin Paul
D. Jayanthi
101 Aerobic and Anaerobic Decolorization of Textile Dyes Using Actinobacteria
695(10)
Vijayakumar Ramasamy
Raja Suresh Selvapuram Sudalaimuhu
102 Bioleaching of Heavy Metals from e-Waste Using Actinobacteria
705(4)
Gopikrishnan Venugopal
Manigundan Kaari
Meganathan P. Ramakodi
Radhakrishnan Manikkam
103 Biosynthesis and Characterization of Silver Nanoparticles from Actinobacteria
709(4)
E. L. T. V. Vimala
G. Rajivgandhi
S. Sridharan
M. Jayapriya
G. Ramachandran
C. Chenthis Kanisha
N. Manoharan
Wen-Jun Li
104 Biosynthesis and Characterization of Gold Nanoparticles from Actinobacteria
713(4)
R. T. V. Vimala
G. Rajivgandhi
S. Sridharan
M. Jayapriya
G. Ramachandran
C. Chenthis Kanisha
N. Manoharan
Wen-Jun Li
105 Antimicrobial Activity of Extracellular Green-Synthesized Nanoparticles by Actinobacteria
717(4)
R. T. V. Vimala
G. Rajivgandhi
S. Sridharan
M. Jayapriya
G. Ramachandran
C. Chenthis Kanisha
N. Manoharan
Wen-Jun Li
106 Antibiofilm Activity of Extracellular Green-Synthesized Nanoparticles by Actinobacteria
721(4)
R. T. V. Vimala
G. Rajivgandhi
S. Sridharan
M. Jayapriya
G. Ramachandran
C. Chenthis Kanisha
N. Manoharan
Wen-Jun Li
107 Cytotoxic Activity of Extracellular Green Synthesized Nanoparticles by Actinobacteria
725(4)
R. T. V. Vimala
G. Rajivgandhi
S. Sridharan
M. Jayapriya
G. Ramachandran
C. Chenthis Kanisha
N. Manoharan
Wen-Jun Li
108 Sporicidal Activity of Extracellular Green-Synthesized Nanoparticles by Actinobacteria
729(4)
R. T. V. Vimala
G. Rajivgandhi
S. Sridharan
M. Jayapriya
G. Ramachandran
C. Chenthis Kanisha
N. Manoharan
Wen-Jun Li
Index 733