Introduction to the second edition |
|
xi | |
Acknowledgements |
|
xiii | |
About the companion website |
|
xv | |
Chapter 1 The basic principles of photosynthetic energy storage |
|
1 | (10) |
|
1.1 What is photosynthesis? |
|
|
1 | (1) |
|
1.2 Photosynthesis is a solar energy storage process |
|
|
2 | (2) |
|
1.3 Where photosynthesis takes place |
|
|
4 | (1) |
|
1.4 The four phases of energy storage in photosynthesis |
|
|
5 | (4) |
|
|
9 | (2) |
Chapter 2 Photosynthetic organisms and organelles |
|
11 | (16) |
|
|
11 | (1) |
|
2.2 Classification of life |
|
|
12 | (2) |
|
2.3 Prokaryotes and eukaryotes |
|
|
14 | (1) |
|
2.4 Metabolic patterns among living things |
|
|
15 | (1) |
|
2.5 Phototrophic prokaryotes |
|
|
15 | (6) |
|
2.6 Photosynthetic eukaryotes |
|
|
21 | (3) |
|
|
24 | (3) |
Chapter 3 History and early development of photosynthesis |
|
27 | (14) |
|
3.1 Van Helmont and the willow tree |
|
|
27 | (1) |
|
3.2 Carl Scheele, Joseph Priestley, and the discovery of oxygen |
|
|
27 | (1) |
|
3.3 Ingenhousz and the role of light in photosynthesis |
|
|
28 | (1) |
|
3.4 Senebier and the role of carbon dioxide |
|
|
29 | (1) |
|
3.5 De Saussure and the participation of water |
|
|
29 | (1) |
|
3.6 The equation of photosynthesis |
|
|
29 | (1) |
|
3.7 Early mechanistic ideas of photosynthesis |
|
|
30 | (2) |
|
3.8 The Emerson and Arnold experiments |
|
|
32 | (2) |
|
3.9 The controversy over the quantum requirement of photosynthesis |
|
|
34 | (1) |
|
3.10 The red drop and the Emerson enhancement effect |
|
|
35 | (1) |
|
3.11 Antagonistic effects |
|
|
36 | (1) |
|
3.12 Early formulations of the Z scheme for photosynthesis |
|
|
37 | (1) |
|
|
38 | (1) |
|
|
38 | (1) |
|
|
38 | (3) |
Chapter 4 Photosynthetic pigments: structure and spectroscopy |
|
41 | (18) |
|
4.1 Chemical structures and distribution of chlorophylls and bacteriochlorophylls |
|
|
41 | (6) |
|
4.2 Pheophytins and bacteriopheophytins |
|
|
47 | (1) |
|
4.3 Chlorophyll biosynthesis |
|
|
47 | (3) |
|
4.4 Spectroscopic properties of chlorophylls |
|
|
50 | (4) |
|
|
54 | (3) |
|
|
57 | (1) |
|
|
58 | (1) |
Chapter 5 Antenna complexes and energy transfer processes |
|
59 | (30) |
|
5.1 General concepts of antennas and a bit of history |
|
|
59 | (1) |
|
|
60 | (2) |
|
|
62 | (1) |
|
5.4 Physical principles of antenna function |
|
|
63 | (8) |
|
5.5 Structure and function of selected antenna complexes |
|
|
71 | (11) |
|
5.6 Regulation of antennas |
|
|
82 | (2) |
|
|
84 | (5) |
Chapter 6 Reaction centers and electron transport pathways in anoxygenic phototrophs |
|
89 | (22) |
|
6.1 Basic principles of reaction center structure and function |
|
|
90 | (1) |
|
6.2 Development of the reaction center concept |
|
|
90 | (1) |
|
6.3 Purple bacterial reaction centers |
|
|
91 | (5) |
|
6.4 Theoretical analysis of biological electron transfer reactions |
|
|
96 | (2) |
|
6.5 Quinone reductions, role of the Fe and pathways of proton uptake |
|
|
98 | (3) |
|
6.6 Organization of electron transfer pathways |
|
|
101 | (2) |
|
6.7 Completing the cycle - the cytochrome bci complex |
|
|
103 | (4) |
|
6.8 Membrane organization in purple bacteria |
|
|
107 | (1) |
|
6.9 Electron transport in other anoxygenic phototrophic bacteria |
|
|
108 | (1) |
|
|
109 | (2) |
Chapter 7 Reaction centers and electron transfer pathways in oxygenic photosynthetic organisms |
|
111 | (22) |
|
7.1 Spatial distribution of electron transport components in thylakoids of oxygenic photosynthetic organisms |
|
|
111 | (2) |
|
7.2 Noncyclic electron flow in oxygenic organisms |
|
|
113 | (1) |
|
7.3 Photosystem II structure and electron transfer pathway |
|
|
113 | (1) |
|
7.4 Photosystem II forms a dimeric supercomplex in the thylakoid membrane |
|
|
114 | (2) |
|
7.5 The oxygen-evolving complex and the mechanism of water oxidation by Photosystem II |
|
|
116 | (4) |
|
7.6 The structure and function of the cytochrome b6f complex |
|
|
120 | (2) |
|
7.7 Plastocyanin donates electrons to Photosystem I |
|
|
122 | (1) |
|
7.8 Photosystem I structure and electron transfer pathway |
|
|
123 | (3) |
|
7.9 Ferredoxin and ferredoxin-NADP reductase complete the noncyclic electron transport chain |
|
|
126 | (3) |
|
|
129 | (4) |
Chapter 8 Chemiosmotic coupling and ATP synthesis |
|
133 | (14) |
|
8.1 Chemical aspects of ATP and the phosphoanhydride bonds |
|
|
133 | (2) |
|
8.2 Historical perspective on ATP synthesis |
|
|
135 | (2) |
|
8.3 Quantitative formulation of proton motive force |
|
|
137 | (1) |
|
8.4 Nomenclature and cellular location of ATP synthase |
|
|
138 | (1) |
|
8.5 Structure of ATP synthase |
|
|
138 | (3) |
|
8.6 The mechanism of chemiosmotic coupling |
|
|
141 | (2) |
|
|
143 | (4) |
Chapter 9 Carbon metabolism |
|
147 | (30) |
|
9.1 The Calvin-Benson cycle is the primary photosynthetic carbon fixation pathway |
|
|
147 | (13) |
|
9.2 Photorespiration is a wasteful competitive process to carboxylation |
|
|
160 | (3) |
|
9.3 The C4 carbon cycle minimizes photorespiration |
|
|
163 | (3) |
|
9.4 Crassulacean acid metabolism avoids water loss in plants |
|
|
166 | (2) |
|
9.5 Algae and cyanobacteria actively concentrate CO2 |
|
|
168 | (1) |
|
9.6 Sucrose and starch synthesis |
|
|
169 | (4) |
|
9.7 Other carbon fixation pathways in anoxygenic phototrophs |
|
|
173 | (1) |
|
|
173 | (4) |
Chapter 10 Genetics, assembly, and regulation of photosynthetic systems |
|
177 | (16) |
|
10.1 Gene organization in anoxygenic photosynthetic bacteria |
|
|
177 | (2) |
|
10.2 Gene expression and regulation of purple photosynthetic bacteria |
|
|
179 | (1) |
|
10.3 Gene organization in cyanobacteria |
|
|
180 | (1) |
|
|
181 | (1) |
|
10.5 Pathways and mechanisms of protein import and targeting in chloroplasts |
|
|
182 | (4) |
|
10.6 Gene regulation and the assembly of photosynthetic complexes in cyanobacteria and chloroplasts |
|
|
186 | (2) |
|
10.7 The regulation of oligomeric protein stoichiometry |
|
|
188 | (1) |
|
|
189 | (4) |
Chapter 11 The use of chlorophyll fluorescence to probe photosynthesis |
|
193 | (6) |
|
11.1 The time course of chlorophyll fluorescence |
|
|
194 | (1) |
|
11.2 The use of fluorescence to determine the quantum yield of Photosystem II |
|
|
195 | (1) |
|
11.3 Fluorescence detection of nonphotochemical quenching |
|
|
196 | (1) |
|
11.4 The physical basis of variable fluorescence |
|
|
197 | (1) |
|
|
197 | (2) |
Chapter 12 Origin and evolution of photosynthesis |
|
199 | (38) |
|
|
199 | (1) |
|
12.2 Early history of the Earth |
|
|
199 | (1) |
|
12.3 Origin and early evolution of life |
|
|
200 | (2) |
|
12.4 Geological evidence for life and photosynthesis |
|
|
202 | (4) |
|
12.5 The nature of the earliest photosynthetic systems |
|
|
206 | (1) |
|
12.6 The origin and evolution of metabolic pathways with special reference to chlorophyll biosynthesis |
|
|
207 | (5) |
|
12.7 Evolutionary relationships among reaction centers and other electron transport components |
|
|
212 | (2) |
|
12.8 Do all photosynthetic reaction centers derive from a common ancestor? |
|
|
214 | (1) |
|
12.9 The origin of linked photosystems and oxygen evolution |
|
|
215 | (3) |
|
12.10 Origin of the oxygen-evolving complex and the transition to oxygenic photosynthesis |
|
|
218 | (3) |
|
12.11 Antenna systems have multiple evolutionary origins |
|
|
221 | (2) |
|
12.12 Endosymbiosis and the origin of chloroplasts |
|
|
223 | (3) |
|
12.13 Most types of algae are the result of secondary endosymbiosis |
|
|
226 | (1) |
|
12.14 Following endosymbiosis, many genes were transferred to the nucleus, and proteins were reimported to the chloroplast |
|
|
226 | (3) |
|
12.15 Evolution of carbon metabolism pathways |
|
|
229 | (1) |
|
|
230 | (7) |
Chapter 13 Bioenergy applications and artificial photosynthesis |
|
237 | (10) |
|
|
237 | (1) |
|
13.2 Solar energy conversion |
|
|
237 | (2) |
|
13.3 What is the efficiency of natural photosynthesis? |
|
|
239 | (2) |
|
13.4 Calculation of the energy storage efficiency of oxygenic photosynthesis |
|
|
241 | (1) |
|
13.5 Why is the efficiency of photosynthesis so low? |
|
|
241 | (1) |
|
13.6 How might the efficiency of photosynthesis be improved? |
|
|
242 | (1) |
|
13.7 Artificial photosynthesis |
|
|
243 | (4) |
References |
|
247 | (2) |
Appendix: Light, energy, and kinetics |
|
249 | (38) |
Index |
|
287 | |